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Items where Subject is Field of Research, Biological Sciences, Genetics, Epigenetics (incl. genome methylation and epigenomics)

Journal Article
Khoury, A and Achinger-Kawecka, J and Bert, SA and Smith, GC and French, HJ and Luu, P-L and Peters, TJ and Du, Q and Parry, AJ and Valdes-Mora, F and Taberlay, PC and Stirzaker, C and Statham, AL and Clark, SJ, Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains, Nature Communications, 11, (1) pp. 1-13. ISSN 2041-1723 (2020) [Refereed Article]
Merid, SK and Novoloaca, A and Sharp, GC and Kupers, LK and Kho, AT and Roy, R and Gao, L and Annesi-Maesano, I and Jain, P and Plusquin, M and Kogevinas, M and Allard, C and Vehmeijer, FO and Kazmi, N and Salas, LA and Rezwan, FI and Zhang, H and Sebert, S and Czamara, D and Rifas-Shiman, SL and Melton, PE and Lawlor, DA and Pershagen, G and Breton, CV and Huen, K and Baiz, N and Gagliardi, L and Nawrot, TS and Corpeleijn, E and Perron, P and Duijts, L and Nohr, EA and Bustamante, M and Ewart, SL and Karmaus, W and Zhao, S and Page, CM and Herceg, Z and Jarvelin, M-R and Lahti, J and Baccarelli, AA and Anderson, D and Kachroo, P and Relton, CL and Bergstrom, A and Eskenazi, B and Soomro, MH and Vineis, P and Snieder, H and Bouchard, L and Jaddoe, VW and Sorensen, TIA and Vrijheid, M and Arshad, SH and Holloway, JW and Haberg, SE and Magnus, P and Dwyer, T and Binder, EB and Demeo, DL and Vonk, JM and Newnham, J and Tantisira, KG and Kull, I and Wiemels, JL and Heude, B and Sunyer, J and Nystad, W and Munthe-Kaas, MC and Raikkonen, K and Oken, E and Huang, R-C and Weiss, ST and Anto, JM and Bousquet, J and Kumar, A and Soderhall, C and Almqvist, C and Cardenas, A and Gruzieva, O and Xu, C-J and Reese, SE and Kere, J and Brodin, P and Solomon, O and Wielscher, M and Holland, N and Ghantous, A and Hivert, M-F and Felix, JF and Koppelman, GH and London, SJ and Melen, E, Epigenome-wide meta-analysis of blood DNA methylation in newborns and children identifies numerous loci related to gestational age, Genome Medicine, 12, (1) pp. 1-17. ISSN 1756-994X (2020) [Refereed Article]
Alghamdi, MA and Wallace, HJ and Melton, PE and Moses, EK and Stevenson, A and Al-Eitan, LN and Rea, S and Duke, JM and Danielsen, PL and Prele, CM and Wood, FM and Fear, MW, Identification of differentially methylated CpG sites in fibroblasts from keloid scars, Biomedicines, 8, (7) pp. 1-16. ISSN 2227-9059 (2020) [Refereed Article]
Rauschert, S and Raubenheimer, K and Melton, PE and Huang, RC, Machine learning and clinical epigenetics: a review of challenges for diagnosis and classification, Clinical Epigenetics, 12, (1) Article 51. ISSN 1868-7083 (2020) [Refereed Article]
Lillycrop, KA and Garratt, ES and Titcombe, P and Melton, PE and Murray, RJS and Barton, SJ and Clarke-Harris, R and Costello, PM and Holbrook, JD and Hopkins, JC and Childs, CE and Paras-Chavez, C and Calder, PC and Mori, TA and Beilin, L and Burdge, GC and Gluckman, PD and Inskip, HM and Harvey, NC and Hanson, MA and Huang, R-C and Cooper, C and Godfrey, KM, Differential SLC6A4 methylation: a predictive epigenetic marker of adiposity from birth to adulthood, International Journal of Obesity, 43, (5) pp. 974-988. ISSN 0307-0565 (2019) [Refereed Article]
Barton, SJ and Melton, PE and Titcombe, P and Murray, R and Rauschert, S and Lillycrop, KA and Huang, R-C and Holbrook, JD and Godfrey, KM, In epigenomic studies, including cell-type adjustments in regression models can introduce multicollinearity, resulting in apparent reversal of direction of association, Frontiers in Genetics, 10 Article 816. ISSN 1664-8021 (2019) [Refereed Article]
Giles, KA and Gould, CM and Du, Q and Skvortsova, K and Song, JZ and Maddugoda, MP and Achinger-Kawecka, J and Stirzaker, C and Clark, SJ and Taberlay, PC, Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups, Epigenetics and Chromatin, 12, (1) Article 12. ISSN 1756-8935 (2019) [Refereed Article]
Rauschert, S and Melton, PE and Burdge, G and Craig, JM and Godfrey, KM and Holbrook, JD and Lillycrop, K and Mori, TA and Beilin, LJ and Oddy, WH and Pennell, C and Huang, R-C, Maternal smoking during pregnancy induces persistent epigenetic changes into adolescence, independent of postnatal smoke exposure and is associated with cardiometabolic risk, Frontiers in Genetics, 10 Article 770. ISSN 1664-8021 (2019) [Refereed Article]
Schmit, SL and Edlund, CK and Schumacher, FR and Gong, J and Harrison, TA and FitzGerald, LM and Gruber, SB, et al, Novel common genetic susceptibility loci for colorectal cancer, Journal of the National Cancer Institute, 111, (2) pp. 146-157. ISSN 0027-8874 (2019) [Refereed Article] 
Bridgeman, S and Northrop, W and Ellison, G and Sabapathy, T and Melton, PE and Newsholme, P and Mamotte, CDS, Statins do not directly inhibit the activity of major epigenetic modifying enzymes, Cancers, 11, (4) pp. 1-14. ISSN 2072-6694 (2019) [Refereed Article]
Delandre, C and Marshall, OJ, United colours of chromatin? Developmental genome organisation in flies, Biochemical Society Transactions, 47, (2) pp. 691-700. ISSN 0300-5127 (2019) [Refereed Article] 
Schumacher, FR and Al Olama, AA and Berndt, SI and Benlloch, S and Ahmed, M and FitzGerald, LM and Eeles, RA, et al, Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci, Nature Genetics, 50, (7) pp. 928-936. ISSN 1061-4036 (2018) [Refereed Article] 
Dadaev, T and Saunders, EJ and Newcombe, PJ and Anokian, E and Leongamornlert, DA and FitzGerald, LM and Kote-Jarai, Z, et al, Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants, Nature Communications, 9, (1) Article 2256. ISSN 2041-1723 (2018) [Refereed Article]
Geurts, YM and Dugue, PA and Joo, JE and Makalic, E and Jung, CH and Guan, W and Nguyen, S and Grove, ML and Wong, EM and Hodge, AM and Bassett, JK and FitzGerald, LM and Tsimiklis, H and Baglietto, L and Severi, G and Schmidt, DF and Buchanan, DD and MacInnis, RJ and Hopper, JL and Pankow, JS and Demerath, EW and Southey, MC and Giles, GG and English, DR and Milne, RL, Novel associations between blood DNA methylation and body mass index in middle-aged and older adults, International Journal of Obesity pp. 1-10. ISSN 1476-5497 (2018) [Refereed Article] 
Song, Y and Khoo, SK and Lee, KH and Makela, M and Haahtela, T and LeSouef, P and Zhang, GB, Dual responses of CD14 methylation to distinct environments: a role in asthma and allergy, The European Respiratory Journal, 50, (6) Article 1701228. ISSN 0903-1936 (2017) [Letter or Note in Journal]
Karyadi, DM and Geybels, MS and Karlins, E and Decker, B and McIntosh, L and Hutchinson, A and Kolb, S and McDonnell, SK and Hicks, B and Middha, S and FitzGerald, LM and DeRycke, MS and Yeager, M and Schaid, DJ and Chanock, SJ and Thibodeau, SN and Berndt, SI and Stanford, JL and Ostrander, EA, Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susceptibility genes, OncoTarget, 8, (1) pp. 1495-1507. ISSN 1949-2553 (2017) [Refereed Article]
Achinger-Kawecka, J and Taberlay, PC and Clark, SJ, Alterations in three-dimensional organization of the cancer genome and epigenome, Cold Spring Harbor Symposia on Quantitative Biology, 81 pp. 41-51. ISSN 0091-7451 (2016) [Refereed Article]
Cazaly, E and Thomson, R and Marthick, JR and Holloway, AF and Charlesworth, J and Dickinson, JL, Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses, Clinical Epigenetics, 8, (1) Article 75. ISSN 1868-7083 (2016) [Refereed Article]
Dugue, PA and Brinkman, MT and Milne, RL and Wong, EM and Fitzgerald, LM and Bassett, JK and Joo, JE and Jung, CH and Makalic, E and Schmidt, DF and Park, DJ and Chung, J and Ta, AD and Bolton, DM and Lonie, A and Longano, A and Hopper, JL and Severi, G and Saffery, R and English, DR and Southey, MC and Giles, GG, Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study, British Journal of Cancer, 115, (6) pp. 664-673. ISSN 0007-0920 (2016) [Refereed Article] 
Paredes, U and Radersma, R and Cannell, N and While, GM and Uller, T, Low Incubation temperature induces DNA hypomethylation in lizard brains, Journal of Experimental Zoology: Part A, 325, (6) pp. 390-395. ISSN 1932-5223 (2016) [Refereed Article] 
Dugue, P-A and English, DR and MacInnis, RJ and Jung, C-H and Bassett, JK and Fitzgerald, LM and Wong, EM and Joo, JE and Hopper, JL and Southey, MC and Giles, GG and Milne, RL, Reliability of DNA methylation measures from dried blood spots and mononuclear cells using the HumanMethylation450k BeadArray, Scientific Reports, 6 Article 30317. ISSN 2045-2322 (2016) [Refereed Article]
Skortsova, K and Taberlay, P and Clark, SJ and Stirzaker, C, Role of 5-Hydroxymethylation and TET enzymes in remodelling the epigenome, Experimental Medicine, 34, (10) pp. 1-9. ISSN 1791-9967 (2016) [Non Refereed Article] 
Taberlay, PC and Achinger-Kawecka, J and Lun, ATL and Buske, FA and Sabir, K and Gould, CM and Zotenko, E and Bert, SA and Giles, KA and Bauer, DC and Smyth, GK and Stirzaker, C and O'Donaghue, SI and Clark, S, Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations, Genome Research, 26 pp. 719-731. ISSN 1549-5469 (2016) [Refereed Article] 
MacInnis, RJ and Schmidt, DF and Makalic, E and Severi, G and FitzGerald, LM and Reumann, M and Kapuscinski, MK and Kowalczyk, A and Zhou, Z and Goudey, B and Qian, G and Bui, QM and Park, DJ and Freeman, A and Southey, MC and Amin Al Olama, A and Kote-Jarai, Z and Eeles, RA and Hopper, JL and Giles, GG, for the UK Genetic Prostate Cancer Study Collaborators, Use of a novel non-parametric version of DEPTH to identify genomic regions associated with prostate cancer risk, Cancer Epidemiology, Biomarkers and Prevention, 25, (12) pp. 1619-1624. ISSN 1055-9965 (2016) [Refereed Article] 
Cazaly, E and Charlesworth, J and Dickinson, JL and Holloway, AF, Genetic determinants of epigenetic patterns: providing insight into disease, Molecular Medicine, 21 pp. 400-409. ISSN 1076-1551 (2015) [Refereed Article] 
Brettingham-Moore, KH and Taberlay, PC and Holloway, AF, Interplay between transcription factors and the epigenome: insight from the role of RUNX1 in leukemia, Frontiers in Immunology, 6 Article 499. ISSN 1664-3224 (2015) [Refereed Article]
Chin, SP and Marthick, JR and West, AC and Short, AK and Chuckowree, J and Polanowski, AM and Thomson, RJ and Holloway, AF and Dickinson, JL, Regulation of the ITGA2 gene by epigenetic mechanisms in prostate cancer, The Prostate, 75, (7) pp. 723-734. ISSN 0270-4137 (2015) [Refereed Article] 
Qadi, A and Taberlay, PC and Phillips, JL and Young, A and West, AC and Brettingham-Moore, KH and Dickinson, JL and Holloway, AF, The leukemia inhibitory factor receptor gene is a direct target of RUNX1, Journal of Cellular Biochemistry, 117, (1) pp. 49-58. ISSN 0730-2312 (2015) [Refereed Article] 
Herbert, KJ and Holloway, A and Cook, AL and Chin, SP and Snow, ET, Arsenic exposure disrupts epigenetic regulation of SIRT1 in human keratinocytes, Toxicology and Applied Pharmacology, 281, (1) pp. 136-145. ISSN 0041-008X (2014) [Refereed Article] 
Taberlay, PC and Stratham, AL and Kelly, TK and Clark, SJ and Jones, PA, Reconfiguration of Nucleosome Depleted Regions at Distal Regulatory Elements Accompanies DNA Methylation of Enhancers and Insulators in Cancer, Genome Research, 24 pp. 1421-1432. ISSN 1088-9051 (2014) [Refereed Article]
Lim, PS and Li, J and Holloway, AF and Rao, S, Epigenetic regulation of inducible gene expression in the immune system, Immunology, 139, (3) pp. 285-293. ISSN 0019-2805 (2013) [Refereed Article] 
Carless, MA and Kulkarni, H and Kos, MZ and Charlesworth, J and Peralta, JM and Goring, HHH and Curran, JE and Almasy, L and Dyer, TD and Comuzzie, AG and Mahaney, MC and Blangero, J, Genetic effects on DNA methylation and its potential relevance for obesity in Mexican Americans, PL o S One, 8, (9) Article e73950. ISSN 1932-6203 (2013) [Refereed Article]
De Carvalho, DD and Sharma, S and You, JS and Su, S-F and Taberlay, PC and Kelly, TK and Yang, X and Liang, G and Jones, PA, DNA Methylation Screening Identifies Driver Epigenetic Events of Cancer Cell Survival, Cancer Cell, 21 pp. 655-667. ISSN 1535-6108 (2012) [Refereed Article] 
Taberlay, PC and Jones, PA, DNA methylation and cancer, Progress in drug research pp. 1-23. ISSN 0071-786X (2011) [Refereed Article] 
Chin, SP and Dickinson, JL and Holloway, AF, Epigenetic regulation of prostate cancer, Clinical Epigenetics, 2, (2) pp. 151-169. ISSN 1868-7075 (2011) [Refereed Article]
You, JS and Kelly, TK and De Carvalho, DD and Taberlay, PC and Liang, G and Jones, PA, OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes, Proceedings of the National Academy of Sciences, 108, (35) pp. 14497-14502. ISSN 0027-8424 (2011) [Refereed Article] 
Taberlay, PC and Kelly, TK and Liu, C-C and You, JS and De Carvalho, DD and Miranda, TB and Zhou, XJ and Liang, G and Jones, PA, Polycomb-Repressed Genes Have Permissive Enhancers that Initiate Reprogramming, Cell, 147 pp. 1283-1294. ISSN 0092-8674 (2011) [Refereed Article] 
Oakford, PC and James, SR and Qadi, A and West, AC and Ray, SN and Bert, AG and Cockerill, PN and Holloway, AF, Transcriptional and epigenetic regulation of the GM-CSF promoter by RUNX1, Leukemia Research, 34, (9) pp. 1203-1213. ISSN 0145-2126 (2010) [Refereed Article]
Chapter in Book
Giles, KA and Taberlay, PC, The Role of Nucleosomes in Epigenetic Gene Regulation, Clinical Epigenetics, Springer, Singapore, LB Hesson and AL Pritchard (ed), Singapore, pp. 87-117. ISBN 978-981-13-8957-3 (2019) [Research Book Chapter] 
Giles, KA and Taberlay, PC, Mutations in Chromatin Remodeling Factors, Encyclopedia of Cancer 3rd Edition, Elsevier, G Pfeifer (ed), United States ISBN 9780128124840 (2018) [Other Book Chapter] 
Brettingham-Moore, KH and Taberlay, PC, Cancer Epigenetics, Drug Discovery in Cancer Epigenetics, Academic Press, G Egger & P Arimondo (ed), United Kingdom, pp. 41-62. ISBN 978-0128022085 (2015) [Research Book Chapter] 
Poke, FS and Holloway, AF, Chemoprevention Targeting Epigenetic Changes in Cancer, Field Cancerization: Basic Science and Clinical Applications, Nova Science Publishers, Gabriel D. Dakubo (ed), New York, pp. 559-575. ISBN 978-1-61761-006-6 (2011) [Research Book Chapter] 
Nustad, HE and Almeida, M and Canty, AJ and LeBlanc, M and Page, CM and Melton, PE, Epigenetics, heritability and longitudinal analysis, BMC Genomic Data, 19, (Suppl 1) pp. 99-140. ISSN 2730-6844 (2018) [Review Several Works]
Lee, KH and Song, Y and O'Sullivan, M and Pereira, G and Loh, R and Zhang, GB, The implications of DNA methylation on food allergy, International Archives of Allergy and Immunology, 173, (4) pp. 183-192. ISSN 1018-2438 (2017) [Substantial Review]
Skulte, KA and Phan, L and Clark, SJ and Taberlay, PC, Chromatin remodeler mutations in human cancers: epigenetic implications, Epigenomics, 6, (4) pp. 397-414. ISSN 1750-1911 (2014) [Substantial Review]
Stirzaker, C and Taberlay, PC and Satham, AL and Clark, SJ, Mining cancer methylomes: prospects and challenges, Trends in Genetics: Dna, Differentiation and Development, 30, (2) pp. 75-84. ISSN 0168-9525 (2014) [Substantial Review]
Conference Publication
Taberlay, PC and Singh, V and Lu, V and Chen, J and Hung, SSC and Dickinson, JL and Taberlay, PC and Cook, AL and Hewitt, AW and Liu, G-S, A genome-wide CRISPR/CAS9 screen to identify novel therapeutic targents for uveal melanoma, The Royal Australian and New Zealand College of Ophthalmologists 50th Annual Scientific Congress, 17-21 November 2018, Adelaide, Australia (2018) [Conference Extract]

This list was generated on Fri May 14 15:04:37 2021.