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DNA metabarcoding captures subtle differences in forest beetle communities following disturbance
journal contribution
posted on 2023-05-20, 19:35 authored by Liu, M, Susan BakerSusan Baker, Christopher BurridgeChristopher Burridge, Gregory JordanGregory Jordan, Laurence ClarkeLaurence ClarkeDNA metabarcoding is an emerging approach for monitoring biodiversity, but uncertainties remain about its capacity to detect subtle differences in invertebrate community composition comparable to those achievable based on conventional morphological identification. In this study, DNA metabarcoding and morphology-based approaches were compared as tools for investigating whether logging history impacted beetle communities in Tasmanian wet eucalypt forests. We compared 12 unlogged mature forest sites with 12 neighboring regeneration sites that had been logged approximately 55 years previously. The number of species identified based on morphology (173) was close to the number of zero-radius operational taxonomic units (ZOTUs) identified by DNA metabarcoding of cytochrome c oxidase subunit I (COI, 176) and 16S ribosomal RNA (16S, 156) markers. Subtle but significant differences in beetle species composition between regeneration and unlogged mature forests were captured by both morphology-based and COI DNA metabarcoding approaches, but not by 16S DNA metabarcoding. Our results support the suitability of mitochondrial COI for studying invertebrate biodiversity. A slight loss of signal compared to the morphology-based approach may be resolved by developing more comprehensive DNA reference databases. While confirming forest recovery of 48-58 years did not fully restore mature forest beetle communities, we suggest that DNA metabarcoding can be used for monitoring biodiversity and probing subtle differences in community composition.
Funding
Australian Research Council
Forestry Tasmania
VicForests
History
Publication title
Restoration EcologyVolume
28Issue
6Pagination
1475-1484ISSN
1061-2971Department/School
School of Natural SciencesPublisher
Blackwell Publishing IncPlace of publication
350 Main St, Malden, USA, Ma, 02148Rights statement
Copyright 2020 Society for Ecological RestorationRepository Status
- Restricted