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ImageSURF: An ImageJ plugin for batch pixel-based image segmentation using random forests

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journal contribution
posted on 2023-05-19, 14:20 authored by Aidan O'Mara, Anna KingAnna King, James VickersJames Vickers, Matthew KirkcaldieMatthew Kirkcaldie
Image segmentation is a necessary step in automated quantitative imaging. ImageSURF is a macro-compatible ImageJ2/FIJI plugin for pixel-based image segmentation that considers a range of image derivatives to train pixel classifiers which are then applied to image sets of any size to produce segmentations without bias in a consistent, transparent and reproducible manner. The plugin is available from ImageJ update site http://sites.imagej.net/ImageSURF/ and source code from https://github.com/omaraa/ImageSURF.

Funding

The Mason Foundation

History

Publication title

Journal of Open Research Software

Volume

5

Article number

31

Number

31

Pagination

1-7

ISSN

2049-9647

Department/School

Wicking Dementia Research Education Centre

Publisher

Ubiquity Press Ltd.

Place of publication

United Kingdom

Rights statement

© 2017 The Authors. Licensed under Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/

Repository Status

  • Open

Socio-economic Objectives

Clinical health not elsewhere classified

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    University Of Tasmania

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