eCite Digital Repository

Items where Subject is Field of Research, Biological Sciences, Genetics, Epigenetics (incl. genome methylation and epigenomics)

Journal Article
Huang, RC and Melton, PE and Burton, MA and Beilin, LJ and Clarke-Harris, R and Cook, E and Godfrey, KM and Burdge, E and Mori, TA and Anderson, D and Rauschert, S and Craig, JM and Kobor, MS and MacIsaac, JL and Morin, AM and Oddy, WH and Pennell, CE and Holbrook, JD and Lillycrop, KA, Adiposity associated DNA methylation signatures in adolescents are related to leptin and perinatal factors, Epigenetics pp. 1-18. ISSN 1559-2294 (2021) [Refereed Article]
Giles, KA and Gould, CM and Achinge-Kawecka, J and Page, SG and Kafer, GR and Rogers, S and Luu, P-L and Cesare, AJ and Clark, SJ and Taberlay, PC, BRG1 knockdown inhibits proliferation through multiple cellular pathways in prostate cancer, Clinical Epigenetics, 13, (1) pp. 1-18. ISSN 1868-7075 (2021) [Refereed Article]
Penova-Veselinovic, B and Melton, PE and Huang, RC and Yovich, JL and Burton, P and Wijs, LA and Hart, RJ, DNA methylation patterns within whole blood of adolescents born from assisted reproductive technology are not different from adolescents born from natural conception, Human Reproduction, 36, (7) pp. 2035-2049. ISSN 0268-1161 (2021) [Refereed Article] 
Lafontaine, M and Campbell, PJ and Castillo-Fernandez, JE and Mullin, S and Lim, EM and Kendrew, P and Lewer, M and Brown, SJ and Huang, R-C and Melton, PE and Mori, TA and Beilin, LJ and Dudbridge, F and Spector, TD and Wright, MJ and Martin, NG and McRae, AF and Panicker, V and Zhu, G and Walsh, JP and Bell, JT and Wilson, SG, Epigenome-wide association study of thyroid function traits identifies novel associations of fT3 with KLF9 and DOT1L, Journal of Clinical Endocrinology and Metabolism, 106, (5) pp. e2191-e2202. ISSN 0021-972X (2021) [Refereed Article] 
Aughey, GN and Delandre, C and McMullen, JPD and Southall, TD and Marshall, OJ, FlyORF-TaDa allows rapid generation of new lines for in vivo cell-type-specific profiling of protein-DNA interactions in Drosophila melanogaster, G3: Genes, Genomes, Genetics, 11, (1) pp. 1-6. ISSN 2160-1836 (2021) [Refereed Article]
Ronkainen, J and Heiskala, A and Vehmeijer, FOL and Lowry, E and Caramaschi, D and Estrada Gutierrez, G and Heiss, JA and Hummel, N and Keikkala, E and Kvist, T and Kupsco, A and Melton, PE and Pesce, G and Soomro, MH and Vives-Usano, M and Baiz, N and Binder, E and Czamara, D and Guxens, M and Mustaniemi, S and London, SJ and Rauschert, S and Vaarasmak, M and Vrijheid, M and Ziegler, A-G and Annesi-Maesano, I and Bustamante, M and Huang, R-C and Hummel, S and Just, AC and Kajantie, E and Lahti, J and Lawlor, D and Raikkonen, K and Jarvelin, M-R and Felix, JF and Sebert, S, Maternal haemoglobin levels in pregnancy and child DNA methylation: a study in the pregnancy and childhood epigenetics consortium, Epigenetics pp. 1-13. ISSN 1559-2294 (2021) [Refereed Article]
Khoury, A and Achinger-Kawecka, J and Bert, SA and Smith, GC and French, HJ and Luu, P-L and Peters, TJ and Du, Q and Parry, AJ and Valdes-Mora, F and Taberlay, PC and Stirzaker, C and Statham, AL and Clark, SJ, Constitutively bound CTCF sites maintain 3D chromatin architecture and long-range epigenetically regulated domains, Nature Communications, 11, (1) Article 54. ISSN 2041-1723 (2020) [Refereed Article]
Vehmeijer, FOL and Kupers, LK and Sharp, GC and Salas, LA and Lent, S and Jima, DD and Tindula, G and Reese, S and Qi, C and Gruzieva, O and Page, C and Rezwan, FI and Melton, PE and Nohr, E and Escaramis, G and Rzehak, P and Heiskala, A and Gong, T and Tuominen, ST and Gao, L and Ross, JP and Starling, AP and Holloway, JW and Yousefi, P and Aasvang, GM and Beilin, LJ and Bergstrom, A and Binder, E and Chatzi, L and Corpeleijn, E and Czamara, D and Eskenazi, B and Ewart, S and Ferre, N and Grote, V and Gruszfeld, D and Haberg, SE and Hoyo, C and Huen, K and Karlsson, R and Kull, I and Langhendries, J-P and Lepeule, J and Magnus, MC and Maguire, RL and Molloy, PL and Monnereau, C and Mori, TA and Oken, E and Raikkonen, K and Rifas-Shiman, S and Ruiz-Arenas, C and Sebert, S and Ullemar, V and Verduci, E and Vonk, JM and Xu, C-J and Yang, IV and Zhang, H and Zhang, W and Karmaus, W and Dabelea, D and Muhlhausler, BS and Breton, CV and Lahti, J and Almqvist, C and Jarvelin, M-R and Koletzko, B and Vrijheid, M and Sorensen, TIA and Huang, R-C and Arshad, SH and Nystad, W and Melen, E and Koppelman, GH and London, SJ and Holland, N and Bustamante, M and Murphy, SK and Hivert, M-F and Baccarelli, A and Relton, CL and Snieder, H and Jaddoe, VWV and Felix, JF, DNA methylation and body mass index from birth to adolescence: meta-analyses of epigenome-wide association studies, Genome Medicine, 12 pp. 1-15. ISSN 1756-994X (2020) [Refereed Article]
Merid, SK and Novoloaca, A and Sharp, GC and Kupers, LK and Kho, AT and Roy, R and Gao, L and Annesi-Maesano, I and Jain, P and Plusquin, M and Kogevinas, M and Allard, C and Vehmeijer, FO and Kazmi, N and Salas, LA and Rezwan, FI and Zhang, H and Sebert, S and Czamara, D and Rifas-Shiman, SL and Melton, PE and Lawlor, DA and Pershagen, G and Breton, CV and Huen, K and Baiz, N and Gagliardi, L and Nawrot, TS and Corpeleijn, E and Perron, P and Duijts, L and Nohr, EA and Bustamante, M and Ewart, SL and Karmaus, W and Zhao, S and Page, CM and Herceg, Z and Jarvelin, M-R and Lahti, J and Baccarelli, AA and Anderson, D and Kachroo, P and Relton, CL and Bergstrom, A and Eskenazi, B and Soomro, MH and Vineis, P and Snieder, H and Bouchard, L and Jaddoe, VW and Sorensen, TIA and Vrijheid, M and Arshad, SH and Holloway, JW and Haberg, SE and Magnus, P and Dwyer, T and Binder, EB and Demeo, DL and Vonk, JM and Newnham, J and Tantisira, KG and Kull, I and Wiemels, JL and Heude, B and Sunyer, J and Nystad, W and Munthe-Kaas, MC and Raikkonen, K and Oken, E and Huang, R-C and Weiss, ST and Anto, JM and Bousquet, J and Kumar, A and Soderhall, C and Almqvist, C and Cardenas, A and Gruzieva, O and Xu, C-J and Reese, SE and Kere, J and Brodin, P and Solomon, O and Wielscher, M and Holland, N and Ghantous, A and Hivert, M-F and Felix, JF and Koppelman, GH and London, SJ and Melen, E, Epigenome-wide meta-analysis of blood DNA methylation in newborns and children identifies numerous loci related to gestational age, Genome Medicine, 12, (1) pp. 1-17. ISSN 1756-994X (2020) [Refereed Article]
Alghamdi, MA and Wallace, HJ and Melton, PE and Moses, EK and Stevenson, A and Al-Eitan, LN and Rea, S and Duke, JM and Danielsen, PL and Prele, CM and Wood, FM and Fear, MW, Identification of differentially methylated CpG sites in fibroblasts from keloid scars, Biomedicines, 8, (7) pp. 1-16. ISSN 2227-9059 (2020) [Refereed Article]
Rauschert, S and Raubenheimer, K and Melton, PE and Huang, RC, Machine learning and clinical epigenetics: a review of challenges for diagnosis and classification, Clinical Epigenetics, 12, (1) Article 51. ISSN 1868-7083 (2020) [Refereed Article]
Ariff, A and Melton, PE and Brennecke, SP and Moses, EK, Analysis of the epigenome in multiplex pre-eclampsia families identifies SORD, DGKI, and ICA1 as novel candidate risk genes, Frontiers in Genetics, 10 pp. 1-11. ISSN 1664-8021 (2019) [Refereed Article]
Lillycrop, KA and Garratt, ES and Titcombe, P and Melton, PE and Murray, RJS and Barton, SJ and Clarke-Harris, R and Costello, PM and Holbrook, JD and Hopkins, JC and Childs, CE and Paras-Chavez, C and Calder, PC and Mori, TA and Beilin, L and Burdge, GC and Gluckman, PD and Inskip, HM and Harvey, NC and Hanson, MA and Huang, R-C and Cooper, C and Godfrey, KM, Differential SLC6A4 methylation: a predictive epigenetic marker of adiposity from birth to adulthood, International Journal of Obesity, 43, (5) pp. 974-988. ISSN 0307-0565 (2019) [Refereed Article]
Reese, SE and Xu, C-J and den Dekker, HT and Lee, MK and Sikdar, S and Ruiz-Arenas, C and Merid, SK and Rezwan, FI and Page, CM and Ullemar, V and Melton, PE and Oh, SS and Yang, IV and Burrows, K and Soderhall, C and Jima, DD and Gao, L and Arathimos, R and Kupers, LK and Wielscher, M and Rzehak, P and Lahti, J and Laprise, C and Madore, A-M and Ward, J and Bennett, BD and Wang, T and Bell, DA and Vonk, JM and Haberg, SE and Zhao, S and Karlsson, R and Hollams, E and Hu, D and Richards, AJ and Bergstrom, A and Sharp, GC and Felix, JF and Bustamante, M and Gruzieva, O and Maguire, RL and Gilliland, F and Baiz, N and Nohr, EA and Corpeleijn, E and Sebert, S and Karmaus, W and Grote, V and Kajantie, E and Magnus, MC and Ortqvist, AK and Eng, C and Liu, AH and Kull, I and Jaddoe, VWV and Sunyer, J and Kere, J and Hoyo, C and Annesi-Maesano, I and Arshad, SH and Koletzko, B and Brunekreef, B and Binder, EB and Raikkonen, K and Reischl, E and Holloway, JW and Jarvelin, M-R and Snieder, H and Kazmi, N and Breton, CV and Murphy, SK and Pershagen, G and Anto, JM and Relton, CL and Schwartz, DA and Burchard, EG and Huang, R-C and Nystad, W and Almqvist, C and Henderson, AJ and Melen, E and Duijts, L and Koppelman, GH and London, SJ and the BIOS consortium, Epigenome-wide meta-analysis of DNA methylation and childhood asthma, Journal of Allergy and Clinical Immunology, 143, (6) pp. 2062-2074. ISSN 0091-6749 (2019) [Refereed Article]
Barton, SJ and Melton, PE and Titcombe, P and Murray, R and Rauschert, S and Lillycrop, KA and Huang, R-C and Holbrook, JD and Godfrey, KM, In epigenomic studies, including cell-type adjustments in regression models can introduce multicollinearity, resulting in apparent reversal of direction of association, Frontiers in Genetics, 10 Article 816. ISSN 1664-8021 (2019) [Refereed Article]
Giles, KA and Gould, CM and Du, Q and Skvortsova, K and Song, JZ and Maddugoda, MP and Achinger-Kawecka, J and Stirzaker, C and Clark, SJ and Taberlay, PC, Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups, Epigenetics and Chromatin, 12, (1) Article 12. ISSN 1756-8935 (2019) [Refereed Article]
Rauschert, S and Melton, PE and Burdge, G and Craig, JM and Godfrey, KM and Holbrook, JD and Lillycrop, K and Mori, TA and Beilin, LJ and Oddy, WH and Pennell, C and Huang, R-C, Maternal smoking during pregnancy induces persistent epigenetic changes into adolescence, independent of postnatal smoke exposure and is associated with cardiometabolic risk, Frontiers in Genetics, 10 Article 770. ISSN 1664-8021 (2019) [Refereed Article]
Kupers, LK and Monnereau, C and Sharp, GC and Yousefi, P and Salas, LA and Ghantous, A and Page, CM and Reese, SE and Wilcox, AJ and Czamara, D and Starling, AP and Novoloaca, A and Lent, S and Roy, R and Hoyo, C and Breton, CV and Allard, C and Just, AC and Bakulski, KM and Holloway, JW and Everson, TM and Xu, C-J and Huang, R-C and van der Plaat, DA and Wielscher, M and Merid, SK and Ullemar, V and Rezwan, FI and Lahti, J and van Dongen, J and Langie, SAS and Richardson, TG and Magnus, MC and Nohr, EA and Xu, Z and Duijts, L and Zhao, S and Zhang, W and Plusquin, M and DeMeo, DL and Solomon, O and Heimovaara, JH and Jima, DD and Gao, L and Bustamante, M and Perron, P and Wright, RO and Hertz-Picciotto, I and Zhang, H and Karagas, MR and Gehring, U and Marsit, CJ and Beilin, LJ and Vonk, JM and Jarvelin, M-R and Bergstrom, A and Ortqvist, AK and Ewart, S and Villa, PM and Moore, SE and Willemsen, G and Standaert, ARL and Haberg, SE and Sorensen, TIA and Taylor, JA and Raikkonen, K and Yang, IV and Kechris, K and Nawrot, TS and Silver, MJ and Gong, YY and Richiardi, L and Kogevinas, M and Litonjua, AA and Eskenazi, B and Huen, K and Mbarek, H and Maguire, RL and Dwyer, T and Vrijheid, M and Bouchard, L and Baccarelli, AA and Croen, LA and Karmaus, W and Anderson, D and de Vries, M and Sebert, S and Kere, J and Karlsson, R and Arshad, SH and Hamalainen, E and Routledge, MN and Boomsma, DI and Feinberg, AP and Newschaffer, CJ and Govarts, E and Moisse, M and Fallin, MD and Melen, E and Prentice, AM and Kajantie, E and Almqvist, C and Oken, E and Dabelea, D and Boezen, HM and Melton, PE and Wright, RJ and Koppelman, GH and Trevisi, L and Hivert, M-F and Sunyer, J and Munthe-Kaas, MC and Murphy, SK and Corpeleijn, E and Wiemels, J and Holland, N and Herceg, Z and Binder, EB and Davey Smith, G and Jaddoe, VWV and Lie, RT and Nystad, W and London, SJ and Lawlor, DA and Relton, CL and Snieder, H and Felix, JF, Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight, Nature Communications, 10, (1) Article 1893. ISSN 2041-1723 (2019) [Refereed Article]
Schmit, SL and Edlund, CK and Schumacher, FR and Gong, J and Harrison, TA and FitzGerald, LM and Gruber, SB, et al, Novel common genetic susceptibility loci for colorectal cancer, Journal of the National Cancer Institute, 111, (2) pp. 146-157. ISSN 0027-8874 (2019) [Refereed Article] 
Bridgeman, S and Northrop, W and Ellison, G and Sabapathy, T and Melton, PE and Newsholme, P and Mamotte, CDS, Statins do not directly inhibit the activity of major epigenetic modifying enzymes, Cancers, 11, (4) pp. 1-14. ISSN 2072-6694 (2019) [Refereed Article]
Delandre, C and Marshall, OJ, United colours of chromatin? Developmental genome organisation in flies, Biochemical Society Transactions, 47, (2) pp. 691-700. ISSN 0300-5127 (2019) [Refereed Article] 
Schumacher, FR and Al Olama, AA and Berndt, SI and Benlloch, S and Ahmed, M and FitzGerald, LM and Eeles, RA, et al, Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci, Nature Genetics, 50, (7) pp. 928-936. ISSN 1061-4036 (2018) [Refereed Article] 
Parmar, P and Lowry, E and Cugliari, G and Suderman, M and Wilson, R and Karhunen, V and Andrew, T and Wiklund, P and Wielscher, M and Guarrera, S and Teumer, A and Lehne, B and Milani, L and de Klein, N and Mishra, PP and Melton, PE and Mandaviya, PR and Kasela, S and Nano, J and Zhang, W and Zhang, Y and Uitterlinden, AG and Peters, A and Schottker, B and Gieger, C and Anderson, D and Boomsma, DI and Grabe, HJ and Panico, S and Veldink, JH and van Meurs, JBJ and van den Berg, L and Beilin, LJ and Franke, L and Loh, M and van Greevenbroek, MMJ and Nauck, M and Kahonen, M and Hurme, MA and Raitakari, OT and Franco, OH and Slagboom, PE and van der Harst, P and Kunze, S and Felix, SB and Zhang, T and Chen, W and Mori, TA and Bonnefond, A and Heijmans, BT and Muka, T and Kooner, JS and Fischer, K and Waldenberger, M and Froguel, P and Huang, R-C and Lehtimaki, T and Rathmann, W and Relton, CL and Matullo, G and Brenner, H and Verweij, N and Li, S and Chambers, JC and Jarvelin, M-R and Sebert, S, Association of maternal prenatal smoking GFI1-locus and cardio-metabolic phenotypes in 18,212 adults, EBioMedicine, 38 pp. 206-216. ISSN 2352-3964 (2018) [Refereed Article]
Felix, JF and Joubert, BR and Baccarelli, AA and Sharp, GC and Almqvist, C and Annesi-Maesano, I and Arshad, H and Baiz, N and Bakermans-Kranenburg, MJ and Bakulski, KM and Binder, EB and Bouchard, L and Breton, CV and Brunekreef, B and Brunst, KJ and Burchard, EG and Bustamante, M and Chatzi, L and Munthe-Kaas, MC and Corpeleijn, E and Czamara, D and Dabelea, D and Smith, GD and De Boever, P and Duijts, L and Dwyer, T and Eng, C and Eskenazi, B and Everson, TM and Falahi, F and Fallin, MD and Farchi, S and Fernandez, MF and Gao, L and Gaunt, TR and Ghantous, A and Gillman, MW and Gonseth, S and Grote, V and Gruzieva, O and Haberg, SE and Herceg, Z and Hivert, M-F and Holland, N and Holloway, JW and Hoyo, C and Hu, D and Huang, R-C and Huen, K and Jarvelin, M-R and Jima, DD and Just, AC and Karagas, MR and Karlsson, R and Karmaus, W and Kechris, KJ and Kere, J and Kogevinas, M and Koletzko, B and Koppelman, GH and Kupers, LK and Ladd-Acosta, C and Lahti, J and Lambrechts, N and Langie, SAS and Lie, RT and Liu, AH and Magnus, MC and Magnus, P and Maguire, RL and Marsit, CJ and McArdle, W and Melen, E and Melton, P and Murphy, SK and Nawrot, TS and Nistico, L and Nohr, EA and Nordlund, B and Nystad, W and Oh, SS and Oken, E and Page, CM and Perron, P and Pershagen, G and Pizzi, C and Plusquin, M and Raikkonen, K and Reese, SE and Reischl, E and Richiardi, L and Ring, S and Roy, RP and Rzehak, P and Schoeters, G and Schwartz, DA and Sebert, S and Snieder, H and Sorensen, TIA and Starling, AP and Sunyer, J and Taylor, JA and Tiemeier, H and Ullemar, V and Vafeiadi, M and Van Ijzendoorn, MH and Vonk, JM and Vriens, A and Vrijheid, M and Wang, P and Wiemels, JL and Wilcox, AJ and Wright, RJ and Xu, C-J and Xu, Z and Yang, IV and Yousefi, P and Zhang, H and Zhang, W and Zhao, S and Agha, G and Relton, CL and Jaddoe, VWV and London, SJ, Cohort profile: Pregnancy and childhood epigenetics (PACE) consortium, International Journal of Epidemiology, 47, (1) pp. 22-23u. ISSN 0300-5771 (2018) [Contribution to Refereed Journal]
Dadaev, T and Saunders, EJ and Newcombe, PJ and Anokian, E and Leongamornlert, DA and FitzGerald, LM and Kote-Jarai, Z, et al, Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants, Nature Communications, 9, (1) Article 2256. ISSN 2041-1723 (2018) [Refereed Article]
Geurts, YM and Dugue, PA and Joo, JE and Makalic, E and Jung, CH and Guan, W and Nguyen, S and Grove, ML and Wong, EM and Hodge, AM and Bassett, JK and FitzGerald, LM and Tsimiklis, H and Baglietto, L and Severi, G and Schmidt, DF and Buchanan, DD and MacInnis, RJ and Hopper, JL and Pankow, JS and Demerath, EW and Southey, MC and Giles, GG and English, DR and Milne, RL, Novel associations between blood DNA methylation and body mass index in middle-aged and older adults, International Journal of Obesity pp. 1-10. ISSN 1476-5497 (2018) [Refereed Article] 
Lillycrop, K and Murray, R and Cheong, C and Teh, AL and Clarke-Harris, R and Barton, S and Costello, P and Garratt, E and Cook, E and Titcombe, P and Shunmuganathan, B and Liew, SJ and Chua, Y-C and Lin, X and Wu, Y and Burdge, GC and Cooper, C and Inskip, HM and Karnani, N and Hopkins, JC and Childs, CE and Chavez, CP and Calder, PC and Yap, F and Lee, YS and Chong, YS and Melton, P and Beilin, L and Huang, R-C and Gluckman, PD and Harvey, N and Hanson, MA and Holbrook, JD and Godfrey, KM, and the EpiGen Consortium, ANRIL promoter DNA methylation: a perinatal marker for later adiposity, EBioMedicine, 19 pp. 60-72. ISSN 2352-3964 (2017) [Refereed Article]
Song, Y and Khoo, SK and Lee, KH and Makela, M and Haahtela, T and LeSouef, P and Zhang, GB, Dual responses of CD14 methylation to distinct environments: a role in asthma and allergy, The European Respiratory Journal, 50, (6) Article 1701228. ISSN 0903-1936 (2017) [Letter or Note in Journal]
Sharp, GC and Salas, LA and Monnereau, C and Allard, C and Yousefi, P and Everson, TM and Bohlin, J and Xu, Z and Huang, R-C and Reese, SE and Xu, C-J and Baiz, N and Hoyo, C and Agha, G and Roy, R and Holloway, JW and Ghantous, A and Merid, SK and Bakulski, KM and Kupers, LK and Zhang, H and Richmond, RC and Page, CM and Duijts, L and Lie, RT and Melton, PE and Vonk, JM and Nohr, EA and Williams-DeVane, C and Huen, K and Rifas-Shiman, SL and Ruiz-Arenas, C and Gonseth, S and Rezwan, FI and Herceg, Z and Ekstrom, S and Croen, L and Falahi, F and Perron, P and Karagas, MR and Quraishi, BM and Suderman, M and Magnus, MC and Jaddoe, VWV and Taylor, JA and Anderson, D and Zhao, S and Smit, HA and Josey, MJ and Bradman, A and Baccarelli, AA and Bustamante, M and Haberg, SE and Pershagen, G and Hertz-Picciotto, I and Newschaffer, C and Corpeleijn, E and Bouchard, L and Lawlor, DA and Maguire, RL and Barcellos, LF and Smith, GD and Eskenazi, B and Karmaus, W and Marsit, CJ and Hivert, M-F and Snieder, H and Fallin, MD and Melen, E and Munthe-Kaas, MC and Arshad, H and Wiemels, JL and Annesi-Maesano, I and Vrijheid, M and Oken, E and Holland, N and Murphy, SK and Sorensen, TIA and Koppelman, GH and Newnham, JP and Wilcox, AJ and Nystad, W and London, SJ and Felix, JF and Relton, CL, Maternal BMI at the start of pregnancy and offspring epigenome-wide DNA methylation: Findings from the pregnancy and childhood epigenetics (PACE) consortium, Human Molecular Genetics, 26, (20) pp. 4067-4085. ISSN 0964-6906 (2017) [Refereed Article]
Karyadi, DM and Geybels, MS and Karlins, E and Decker, B and McIntosh, L and Hutchinson, A and Kolb, S and McDonnell, SK and Hicks, B and Middha, S and FitzGerald, LM and DeRycke, MS and Yeager, M and Schaid, DJ and Chanock, SJ and Thibodeau, SN and Berndt, SI and Stanford, JL and Ostrander, EA, Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susceptibility genes, OncoTarget, 8, (1) pp. 1495-1507. ISSN 1949-2553 (2017) [Refereed Article]
Achinger-Kawecka, J and Taberlay, PC and Clark, SJ, Alterations in three-dimensional organization of the cancer genome and epigenome, Cold Spring Harbor Symposia on Quantitative Biology, 81 pp. 41-51. ISSN 0091-7451 (2016) [Refereed Article]
Cazaly, E and Thomson, R and Marthick, JR and Holloway, AF and Charlesworth, J and Dickinson, JL, Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses, Clinical Epigenetics, 8, (1) Article 75. ISSN 1868-7083 (2016) [Refereed Article]
Dugue, PA and Brinkman, MT and Milne, RL and Wong, EM and Fitzgerald, LM and Bassett, JK and Joo, JE and Jung, CH and Makalic, E and Schmidt, DF and Park, DJ and Chung, J and Ta, AD and Bolton, DM and Lonie, A and Longano, A and Hopper, JL and Severi, G and Saffery, R and English, DR and Southey, MC and Giles, GG, Genome-wide measures of DNA methylation in peripheral blood and the risk of urothelial cell carcinoma: a prospective nested case-control study, British Journal of Cancer, 115, (6) pp. 664-673. ISSN 0007-0920 (2016) [Refereed Article]
Paredes, U and Radersma, R and Cannell, N and While, GM and Uller, T, Low Incubation temperature induces DNA hypomethylation in lizard brains, Journal of Experimental Zoology: Part A, 325, (6) pp. 390-395. ISSN 1932-5223 (2016) [Refereed Article] 
Dugue, P-A and English, DR and MacInnis, RJ and Jung, C-H and Bassett, JK and Fitzgerald, LM and Wong, EM and Joo, JE and Hopper, JL and Southey, MC and Giles, GG and Milne, RL, Reliability of DNA methylation measures from dried blood spots and mononuclear cells using the HumanMethylation450k BeadArray, Scientific Reports, 6 Article 30317. ISSN 2045-2322 (2016) [Refereed Article]
Skortsova, K and Taberlay, P and Clark, SJ and Stirzaker, C, Role of 5-Hydroxymethylation and TET enzymes in remodelling the epigenome, Experimental Medicine, 34, (10) pp. 1-9. ISSN 1791-9967 (2016) [Non Refereed Article] 
Taberlay, PC and Achinger-Kawecka, J and Lun, ATL and Buske, FA and Sabir, K and Gould, CM and Zotenko, E and Bert, SA and Giles, KA and Bauer, DC and Smyth, GK and Stirzaker, C and O'Donaghue, SI and Clark, S, Three-dimensional disorganisation of the cancer genome occurs coincident with long range genetic and epigenetic alterations, Genome Research, 26 pp. 719-731. ISSN 1549-5469 (2016) [Refereed Article] 
MacInnis, RJ and Schmidt, DF and Makalic, E and Severi, G and FitzGerald, LM and Reumann, M and Kapuscinski, MK and Kowalczyk, A and Zhou, Z and Goudey, B and Qian, G and Bui, QM and Park, DJ and Freeman, A and Southey, MC and Amin Al Olama, A and Kote-Jarai, Z and Eeles, RA and Hopper, JL and Giles, GG, for the UK Genetic Prostate Cancer Study Collaborators, Use of a novel non-parametric version of DEPTH to identify genomic regions associated with prostate cancer risk, Cancer Epidemiology, Biomarkers and Prevention, 25, (12) pp. 1619-1624. ISSN 1055-9965 (2016) [Refereed Article] 
Cazaly, E and Charlesworth, J and Dickinson, JL and Holloway, AF, Genetic determinants of epigenetic patterns: providing insight into disease, Molecular Medicine, 21 pp. 400-409. ISSN 1076-1551 (2015) [Refereed Article] 
Brettingham-Moore, KH and Taberlay, PC and Holloway, AF, Interplay between transcription factors and the epigenome: insight from the role of RUNX1 in leukemia, Frontiers in Immunology, 6 Article 499. ISSN 1664-3224 (2015) [Refereed Article]
Chin, PS and Marthick, JR and West, AC and Short, AK and Chuckowree, J and Polanowski, AM and Thomson, RJ and Holloway, AF and Dickinson, JL, Regulation of the ITGA2 gene by epigenetic mechanisms in prostate cancer, The Prostate, 75, (7) pp. 723-734. ISSN 0270-4137 (2015) [Refereed Article] 
Qadi, A and Taberlay, PC and Phillips, JL and Young, A and West, AC and Brettingham-Moore, KH and Dickinson, JL and Holloway, AF, The leukemia inhibitory factor receptor gene is a direct target of RUNX1, Journal of Cellular Biochemistry, 117, (1) pp. 49-58. ISSN 0730-2312 (2015) [Refereed Article] 
Herbert, KJ and Holloway, A and Cook, AL and Chin, PS and Snow, ET, Arsenic exposure disrupts epigenetic regulation of SIRT1 in human keratinocytes, Toxicology and Applied Pharmacology, 281, (1) pp. 136-145. ISSN 0041-008X (2014) [Refereed Article] 
Taberlay, PC and Stratham, AL and Kelly, TK and Clark, SJ and Jones, PA, Reconfiguration of Nucleosome Depleted Regions at Distal Regulatory Elements Accompanies DNA Methylation of Enhancers and Insulators in Cancer, Genome Research, 24 pp. 1421-1432. ISSN 1088-9051 (2014) [Refereed Article]
Lim, PS and Li, J and Holloway, AF and Rao, S, Epigenetic regulation of inducible gene expression in the immune system, Immunology, 139, (3) pp. 285-293. ISSN 0019-2805 (2013) [Refereed Article] 
Carless, MA and Kulkarni, H and Kos, MZ and Charlesworth, J and Peralta, JM and Goring, HHH and Curran, JE and Almasy, L and Dyer, TD and Comuzzie, AG and Mahaney, MC and Blangero, J, Genetic effects on DNA methylation and its potential relevance for obesity in Mexican Americans, PL o S One, 8, (9) Article e73950. ISSN 1932-6203 (2013) [Refereed Article]
De Carvalho, DD and Sharma, S and You, JS and Su, S-F and Taberlay, PC and Kelly, TK and Yang, X and Liang, G and Jones, PA, DNA Methylation Screening Identifies Driver Epigenetic Events of Cancer Cell Survival, Cancer Cell, 21 pp. 655-667. ISSN 1535-6108 (2012) [Refereed Article] 
Taberlay, PC and Jones, PA, DNA methylation and cancer, Progress in drug research pp. 1-23. ISSN 0071-786X (2011) [Refereed Article] 
Chin, SP and Dickinson, JL and Holloway, AF, Epigenetic regulation of prostate cancer, Clinical Epigenetics, 2, (2) pp. 151-169. ISSN 1868-7075 (2011) [Refereed Article]
You, JS and Kelly, TK and De Carvalho, DD and Taberlay, PC and Liang, G and Jones, PA, OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes, Proceedings of the National Academy of Sciences, 108, (35) pp. 14497-14502. ISSN 0027-8424 (2011) [Refereed Article] 
Taberlay, PC and Kelly, TK and Liu, C-C and You, JS and De Carvalho, DD and Miranda, TB and Zhou, XJ and Liang, G and Jones, PA, Polycomb-Repressed Genes Have Permissive Enhancers that Initiate Reprogramming, Cell, 147 pp. 1283-1294. ISSN 0092-8674 (2011) [Refereed Article] 
Oakford, PC and James, SR and Qadi, A and West, AC and Ray, SN and Bert, AG and Cockerill, PN and Holloway, AF, Transcriptional and epigenetic regulation of the GM-CSF promoter by RUNX1, Leukemia Research, 34, (9) pp. 1203-1213. ISSN 0145-2126 (2010) [Refereed Article]
Chapter in Book
Giles, KA and Taberlay, PC, The Role of Nucleosomes in Epigenetic Gene Regulation, Clinical Epigenetics, Springer, Singapore, LB Hesson and AL Pritchard (ed), Singapore, pp. 87-117. ISBN 978-981-13-8957-3 (2019) [Research Book Chapter] 
Giles, KA and Taberlay, PC, Mutations in Chromatin Remodeling Factors, Encyclopedia of Cancer 3rd Edition, Elsevier, G Pfeifer (ed), United States ISBN 9780128124840 (2018) [Other Book Chapter] 
Brettingham-Moore, KH and Taberlay, PC, Cancer Epigenetics, Drug Discovery in Cancer Epigenetics, Academic Press, G Egger & P Arimondo (ed), United Kingdom, pp. 41-62. ISBN 978-0128022085 (2015) [Research Book Chapter] 
Poke, FS and Holloway, AF, Chemoprevention Targeting Epigenetic Changes in Cancer, Field Cancerization: Basic Science and Clinical Applications, Nova Science Publishers, Gabriel D. Dakubo (ed), New York, pp. 559-575. ISBN 978-1-61761-006-6 (2011) [Research Book Chapter] 
Bridgeman, SC and Ellison, GC and Melton, PE and Newsholme, P and Mamotte, CDS, Epigenetic effects of metformin: From molecular mechanisms to clinical implications, Diabetes Obesity & Metabolism, 20, (7) pp. 1553-1562. ISSN 1462-8902 (2018) [Substantial Review]
Nustad, HE and Almeida, M and Canty, AJ and LeBlanc, M and Page, CM and Melton, PE, Epigenetics, heritability and longitudinal analysis, BMC Genomic Data, 19, (Suppl 1) pp. 99-140. ISSN 2730-6844 (2018) [Review Several Works]
Lee, KH and Song, Y and O'Sullivan, M and Pereira, G and Loh, R and Zhang, GB, The implications of DNA methylation on food allergy, International Archives of Allergy and Immunology, 173, (4) pp. 183-192. ISSN 1018-2438 (2017) [Substantial Review]
Skulte, KA and Phan, L and Clark, SJ and Taberlay, PC, Chromatin remodeler mutations in human cancers: epigenetic implications, Epigenomics, 6, (4) pp. 397-414. ISSN 1750-1911 (2014) [Substantial Review]
Stirzaker, C and Taberlay, PC and Satham, AL and Clark, SJ, Mining cancer methylomes: prospects and challenges, Trends in Genetics: Dna, Differentiation and Development, 30, (2) pp. 75-84. ISSN 0168-9525 (2014) [Substantial Review]
Conference Publication
Taberlay, PC and Singh, V and Lu, V and Chen, J and Hung, SSC and Dickinson, JL and Cook, AL and Hewitt, AW and Liu, G-S, A genome-wide CRISPR/CAS9 screen to identify novel therapeutic targents for uveal melanoma, The Royal Australian and New Zealand College of Ophthalmologists 50th Annual Scientific Congress, 17-21 November 2018, Adelaide, Australia (2018) [Conference Extract]

This list was generated on Thu Dec 8 03:25:14 2022.