| Journal Article |
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| Patton, AH and Margres, MJ and Stahlke, AR and Hendricks, S and Lewallen, K and Hamede, R and Ruiz-Aravena, M and Ryder, O and McCallum, HI and Jones, ME and Hohenlohe, PA and Storfer, A, Contemporary demographic reconstruction methods are robust to genome assembly quality: a case study in Tasmanian devils, Molecular Biology and Evolution, 36, (12) pp. 2906-2921. ISSN 0737-4038 (2019) [Refereed Article] |  |
| Otlowski, M and Jane, T and Barlow-Stewart, K and Lacaze, P, Genetic testing and insurance in Australia, Australian Journal of General Practice, 48, (3) ISSN 2208-7958 (2019) [Refereed Article] | |
| Xu, J and Falconer, C and Nguyen, Q and Crawford, J and McKinnon, BD and Mortlock, S and Senabouth, A and Andersen, S and Chiu, HS and Jiang, L and Palpant, NJ and Yang, J and Mueller, MD and Hewitt, AW and Pebay, A and Montgomery, GW and Powell, JE and Coin, LJM, Genotype-free demultiplexing of pooled single-cell RNA-seq, Genome Biology, 20, (1) Article 290. ISSN 1474-760X (2019) [Refereed Article] | |
| Zhang, T and Wallis, M and Petrovic, V and Challis, J and Kalitsis, P and Hudson, DF, Loss of TOP3B leads to increased R-loop formation and genome instability, Open Biology, 9, (12) Article 190222. ISSN 2046-2441 (2019) [Refereed Article] | |
| Blackburn, NB and Michael, LF and Meikle, PJ and Peralta, JM and Mosior, M and McAhren, S and Bui, HH and Bellinger, MA and Giles, C and Kumar, S and Leandro, AC and Almeida, M and Weir, JM and Mahaney, MC and Dyer, TD and Almasy, L and VandeBerg, JL and Williams-Blangero, S and Glahn, DC and Duggirala, R and Kowala, M and Blangero, J and Curran, JE, Rare DEGS1 variant significantly alters de novo ceramide synthesis pathway, Journal of Lipid Research, 60, (9) pp. 1630-1639. ISSN 0022-2275 (2019) [Refereed Article] | |
| Andrade, P and Pinho, C and Perez i de Lanuza, G and Afonso, S and Brejcha, J and Rubin, C-J and Wallerman, O and Pereira, P and Sabatino, SJ and Bellati, A and Pellitteri-Rosa, D and Bosakova, Z and Bunikis, I and Carretero, MA and Feiner, N and Marsik, P and Pauperio, F and Salvi, D and Soler, L and While, GM and Uller, T and Font, E and Andersson, L and Carneiro, M, Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard, Proceedings of the National Academy of Sciences, 116, (12) pp. 5633-5642. ISSN 0027-8424 (2019) [Refereed Article] | |
| Adamcik, S and Looney, B and Cabon, M and Jancovicova, S and Adamcikova, K and Avis, PG and Barajas, M and Bhatt, RP and Corrales, A and Das, K and Hampe, F and Ghosh, A and Gates, G and Kalviainen, V and Khalid, AN and Kiran, M and De Lange, R and Lee, H and Lim, YW and Kong, A and Manz, C and Ovrebo, C and Saba, M and Taipale, T and Verbeken, A and Wisitrassameewong, K and Buyck, B, The quest for a globally comprehensible Russula language, Fungal Diversity, 99 pp. 369-449. ISSN 1878-9129 (2019) [Refereed Article] | |
| Peralta, JM and Blackburn, NB and Porto, A and Blangero, J and Charlesworth, J, Genome-wide linkage scan for loci influencing plasma triglyceride levels, BMC Proceedings, 12, (Suppl 9) Article 52. ISSN 1753-6561 (2018) [Refereed Article] | |
| Tschitschko, B and Erdmann, S and DeMaere, MZ and Roux, S and Panwar, P and Allen, MA and Williams, TJ and Brazendale, S and Hancock, A and Eloe-Fadrosh, EA and Cavicchioli, R, Genomic variation and biogeography of Antarctic haloarchaea, Microbiome, 6, (1) Article 113. ISSN 2049-2618 (2018) [Refereed Article] | |
| Margres, MJ and Jones, ME and Epstein, B and Kerlin, DH and Comte, S and Fox, S and Fraik, AK and Hendricks, SA and Huxtable, S and Lachish, S and Lazenby, B and O'Rourke, SM and Stahlke, AR and Wiench, CG and Hamede, R and Schonfeld, B and McCallum, H and Miller, MR and Hohenlohe, PA and Storfer, A, Large-effect loci affect survival in Tasmanian devils (Sarcophilus harrisii) infected with a transmissible cancer, Molecular Ecology, 27, (21) pp. 4189-4199. ISSN 0962-1083 (2018) [Refereed Article] | |
| Storfer, A and Hohenlohe, PA and Margres, MJ and Patton, A and Fraik, AK and Lawrance, M and Ricci, LE and Stahlke, AR and McCallum, HI and Jones, ME, The devil is in the details: Genomics of transmissible cancers in Tasmanian devils, PLoS Pathogens, 14, (8) Article e1007098. ISSN 1553-7366 (2018) [Refereed Article] | |
| Margres, MJ and Ruiz-Aravena, M and Hamede, R and Jones, ME and Lawrance, MF and Hendricks, SA and Patton, A and Davis, BW and Ostrande, EA and McCallum, H and Hohenlohe, PA and Storfer, A, The genomic basis of tumor regression in Tasmanian devils (Sarcophilus harrisii), Genome Biology and Evolution, 10, (11) pp. 3012-3025. ISSN 1759-6653 (2018) [Refereed Article] | |
| Hane, JK and Ming, Y and Kamphuis, LG and Nelson, MN and Garg, G and Atkins, CA and Bayer, PE and Bravo, A and Bringans, S and Cannon, S and Edwards, D and Foley, R and Gao, L and Harrison, MJ and Huang, W and Hurgobin, B and Li, S and Liu, C-W and McGrath, A and Morahan, G and Murray, J and Weller, J and Jian, J and Singh, KB, A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution, Plant Biotechnology Journal, 15, (3) pp. 318-330. ISSN 1467-7644 (2017) [Refereed Article] | |
| De Paoli-Iseppi, R and Polanowski, AM and McMahon, C and Deagle, BE and Dickinson, JL and Hindell, MA and Jarman, SN, DNA methylation levels in candidate genes associated with chronological age in mammals are not conserved in a long-lived seabird, PLoS One, 12, (12) Article e0189181. ISSN 1932-6203 (2017) [Refereed Article] | |
| Tanifuji, G and Cenci, U and Moog, D and Dean, S and Nakayama, T and David, V and Fiala, I and Curtis, BA and Sibbald, SJ and Onodera, NT and Colp, M and Flegontov, P and Johnson-Mackinnon, J and McPhee, M and Inagaki, Y and Hashimoto, T and Kelly, S and Gull, K and Lukes, J and Archibald, JM, Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis, Scientific Reports, 7 Article 11688. ISSN 2045-2322 (2017) [Refereed Article] | |
| Dueck, HR and Ai, R and Camarena, A and Ding, B and Dominguez, R and Evgrafov, OV and Fan, J-B and Fisher, SA and Herstein, JS and Kim, TK and Kim, JM and Lin, M-Y and Liu, R and Mack, WJ and McGroty, S and Nguyen, JD and Salathia, N and Shallcross, J and Souaiaia, T and Spaethling, JM and Walker, CP and Wang, CP and Wang, J and Wang, W and Wildberg, A and Zheng, L and Chow, RH and Eberwine, J and Knowles, JA and Zhang, K and Kim, J, Assessing characteristics of RNA amplification methods for single cell RNA sequencing, Bmc Genomics, 17 pp. 1-22. ISSN 1471-2164 (2016) [Refereed Article] | |
| Dodt, WG and McComish, BJ and Nilsson, MA and Gibb, GC and Penny, D and Phillips, MJ, The complete mitochondrial genome of the eastern grey kangaroo (Macropus giganteus), Mitochondrial DNA, 27, (2) pp. 1366-1367. ISSN 1940-1736 (2016) [Refereed Article] | |
| Wright, B and Morris, K and Grueber, CE and Willet, CE and Gooley, R and Hogg, CJ and O'Meally, D and Hamede, R and Jones, M and Wade, C and Belov, K, Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population, BMC Genomics, 16, (791) pp. 1-11. ISSN 1471-2164 (2015) [Refereed Article] | |
| Willet, CE and Haase, B and Charleston, MA and Wade, CM, Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker, Bioinformatics, 31, (4) pp. 599-601. ISSN 1367-4803 (2015) [Refereed Article] | |
| Bodrossy, L, The full metagenomics cycle, Environmental Microbiology, 17, (12) pp. 4819-4821. ISSN 1462-2912 (2015) [Letter or Note in Journal] | |
| Qiu, Y and Zhang, ZY and Du, WD and Ye, L and Xu, S and Zuo, XB and Zhou, FS and Chen, G and Ma, XL and Schneider, ME and Xia, HZ and Zhou, Y and Wu, JF and Yuan-Hong, X and Zhang, XJ, Association analysis of ERBB2 amplicon genetic polymorphisms and STARD3 expression with risk of gastric cancer in the Chinese population, Gene, 535, (2) pp. 225-232. ISSN 0378-1119 (2014) [Refereed Article] | |
| Zhou, Y and Du, WD and Wu, Q and Liu, Y and Chen, G and Ruan, J and Xu, S and Yang, F and Zhou, FS and Tang, XF and Tang, HY and Zuo, XB and Zhang, FY and Sun, LD and Zhang, XJ, EZH2 genetic variants affect risk of gastric cancer in the Chinese Han population, Molecular Carcinogenesis, 53, (8) pp. 589-597. ISSN 0899-1987 (2014) [Refereed Article] | |
| Rubicz, R and Yolken, R and Alaedini, A and Drigalenko, E and Charlesworth, JC and Carless, MA and Severance, EG and Krivogorsky, B and Dyer, TD and Kent Jr, JW and Curran, JE and Johnson, MP and Cole, SA and Almasy, L and Moses, EK and Blangero, J and Goring, HHH, Genome-wide genetic and transcriptomic investigation of variation in antibody response to dietary antigens, Genetic Epidemiology, 38, (5) pp. 439-446. ISSN 0741-0395 (2014) [Refereed Article] | |
| Karanovic, T and Kim, K and Lee, W, Morphological and molecular affinities of two east Asian species of Stenhelia (Crustacea, Copepoda, Harpacticoida), ZooKeys, 411 pp. 105-143. ISSN 1313-2989 (2014) [Refereed Article] | |
| Xu, S and Zhou, Y and Du, WD and Chen, G and Zhou, FS and Schneider, M and Ma, XL and Xu, HY and Zhang, XJ, Association of the variant rs2243421 of human DOC-2/DAB2 interactive protein gene (hDAB2IP) with gastric cancer in the Chinese Han population, Gene, 515, (1) pp. 200-204. ISSN 0378-1119 (2013) [Refereed Article] | |
| Ye, L and Zhang, Z-Y and Du, WD and Schneider, ME and Qiu, Y and Zhou, Y and Zhou, FS and Zuo, XB and Chen, G and Ma, XL and Xia, HZ and Xu, S and Wu, JF and Xu, HY and Zhang, XJ, Genetic analysis of ADIPOQ variants and gastric cancer risk: a hospital-based case-control study in China, Medical Oncology, 30, (3) pp. 1-10. ISSN 1357-0560 (2013) [Refereed Article] | |
| Freeman, JS and Potts, BM and Downes, GM and Pilbeam, D and Thavamanikumar, S and Vaillancourt, RE, Stability of quantitative trait loci for growth and wood properties across multiple pedigrees and environments in Eucalyptus globulus, New Phytologist, 198, (4) pp. 1121-1134. ISSN 0028-646X (2013) [Refereed Article] | |
| He, X-J and Ruan, J and Du, W-D and Chen, G and Zhou, Y and Xu, S and Zuo, X-B and Cao, Y-X and Zhang, X-J, PRM1 variant rs35576928 (Arg>Ser) is associated with defective spermatogenesis in the Chinese Han population, Reproductive Biomedicine Online, 25, (6) pp. 627-634. ISSN 1472-6483 (2012) [Refereed Article] | |
| Wilkins, EJ and Rubio, JP and Kotschet, KE and Cowie, TF and Boon, WC and O'Hely, M and Burfoot, R and Wang, W and Sue, CM and Speed, TP and Stankovich, J and Horne, MK, A DNA resequencing array for genes involved in Parkinson's disease, Parkinsonism and related disorders, 18, (4) pp. 386-390. ISSN 1353-8020 (2012) [Refereed Article] | |
| Maher, BH and Lea, RA and Benton, M and Cox, HC and Bellis, C and Carless, M and Dyer, TD and Curran, J and Charlesworth, JC and Buring, JE and Kurth, T and Chasman, DI and Ridker, PM and Schurks, M and Blangero, J and Griffiths, LR, An X chromosome association scan of the Norfolk Island genetic isolate provides evidence for a novel migraine susceptibility locus at Xq12, PLoS One, 7, (5) Article e37903. ISSN 1932-6203 (2012) [Refereed Article] | |
| Zhou, Y and Du, WD and Chen, G and Ruan, J and Xu, S and Zhou, FS and Zuo, XB and Lv, ZJ and Zhang, XJ, Association analysis of genetic variants in microRNA networks and gastric cancer risk in a Chinese Han population, Journal of Cancer Research and Clinical Oncology, 138, (6) pp. 939-945. ISSN 0171-5216 (2012) [Refereed Article] | |
| Xia, H-Z and Du, W-D and Wu, Q and Chen, G and Zhou, Y and Tang, X-F and Tang, H-Y and Liu, Y and Yang, F and Ruan, J and Xu, S and Zuo, X-B and Zhang, X-J, E-Selectin rs5361 and FCGR2A rs1801274 variants were associated with increased risk of gastric cancer in a Chinese population, Molecular Carcinogenesis, 51, (8) pp. 597-607. ISSN 0899-1987 (2012) [Refereed Article] | |
| Ruan, J and He, X-J and Du, W-D and Chen, G and Zhou, Y and Xu, S and Zuo, X-B and Fang, L-B and Cao, Y-X and Zhang, X-J, Genetic variants in TEX15 gene conferred susceptibility to spermatogenic failure in the Chinese Han population, Reproductive Sciences, 19, (11) pp. 1190-1196. ISSN 1933-7191 (2012) [Refereed Article] | |
| Murchison, EP and Schulz-Trieglaff, OB and Ning, Z and Alexandrov, LB and Bauer, MJ and Fu, B and Hims, M and Ding, Z and Ivakhno, S and Stewart, C and Ng, BL and Wong, W and Aken, B and White, S and Alsop, A and Becq, J and Bignell, GR and Cheetham, RK and Cheng, W and Connor, TR and Cox, AJ and Feng, Z-P and Gu, Y and Grocock, RJ and Harris, SR and Khrebtukova, I and Kingsbury, Z and Kowarsky, M and Kreiss, A and Luo, S and Marshall, J and McBride, DJ and Murray, L and Pearse, AM and Raine, K and Rasolonjatovo, I and Shaw, R and Tedder, P and Tregidgo, C and Vilella, AJ and Wedge, DC and Woods, GM and Gormley, N and Humphray, S and Schroth, G and Smith, G and Hall, K and Searle, SMJ and Carter, NP and Papenfuss, AT and Futreal, PA and Campbell, PJ and Yang, F and Bentley, DR and Evers, DJ and Stratton, MR, Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer, Cell, 148, (4) pp. 780-791. ISSN 0092-8674 (2012) [Refereed Article] | |
| Bastarrachea, RA and Gallegos-Cabriales, EC and Nava-Gonzalez, EJ and Haack, K and Voruganti, VS and Charlesworth, J and Laviada-Molina, HA and Veloz-Garza, RA and Cardenas-Villarreal, VM and Valdovinos-Chavez, SB and Gomez-Aguilar, P and Melendez, G and Lopez-Alvarenga, JC and Goring, HHH and Cole, SA and Blangero, J and Comuzzie, AG and Kent Jr, JW, Integrating genomic analysis with the genetic basis of gene expression: preliminary evidence of the identification of causal genes for cardiovascular and metabolic traits related to nutrition in Mexicans, Advances in Nutrition, 3, (4) pp. 596S-604S. ISSN 2161-8313 (2012) [Refereed Article] | |
| Rumbold, AR and Tan, SE and Condon, JR and Taylor-Thomson, D and Nickels, M and Tabrizi, SN and Davy, MLJ and O'Brien, MM and Connors, CM and Zardawi, I and Stankovich, J and Garland, SM, Investigating a cluster of vulvar cancer in young women: a cross-sectional study of genital human papillomavirus prevalence, BMC Infectious Diseases, 12 Article 243. ISSN 1471-2334 (2012) [Refereed Article] | |
| Almasy, L and Dyer, TD and Peralta, JM and Kent Jr, JW and Charlesworth, JC and Curran, JE and Blangero, J, Genetic Analysis Workshop 17 mini-exome simulation, BMC Proceedings, 5, (Supplement 9) Article S2. ISSN 1753-6561 (2011) [Refereed Article] | |
| Komatsu, M and Itoh, T and Fujimori, Y and Satoh, M and Miyazaki, Y and Takahashi, H and Shimizu, K and Malau-Aduli, AEO and Morita, M, Genetic association between GHSR1a 5'UTR-microsatellite and nt-7 (C>A) loci and growth and carcass traits in Japanese Black cattle, Animal Science Journal, 82, (3) pp. 396-405. ISSN 1344-3941 (2011) [Refereed Article] | |
| Sansaloni, CP and Petroli, CD and Carling, J and Hudson, CJ and Steane, DA and Myburg, AA and Grattapaglia, D and Vaillancourt, RE and Kilian, A, A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus, Plant Methods, 6, (16) EJ ISSN 1746-4811 (2010) [Refereed Article] | |
| Gawrieh, S and Baye, TM and Carless, M and Wallace, J and Komorowski, R and Kleiner, DE and Andris, D and Makladi, B and Cole, R and Charlton, M and Curran, J and Dyer, TD and Charlesworth, JC and Wilke, R and Blangero, J and Kissebah, AH and Olivier, M, Hepatic Gene Networks in Morbidly Obese Patients With Nonalcoholic Fatty Liver Disease, Obesity Surgery: Including Laparoscopy and Allied Care, 20, (12) pp. 1698-1709. ISSN 0960-8923 (2010) [Refereed Article] | |
| McComish, BJ and Hills, SFK and Biggs, PJ and Penny, D, Index-free de novo assembly and deconvolution of mixed mitochondrial genomes, Genome Biology and Evolution, 2 pp. 410-424. ISSN 1759-6653 (2010) [Refereed Article] | |
| Komatsu, M and Fujimori, Y and Sato, Y and Okamura, H and Sasaki, S and Itoh, T and Morita, M and Nakamura, R and Oe, T and Furuta, M and Yasuda, J and Kojima, T and Watanabe, T and Hayashi, T and Malau-Aduli, AEO and Takahashi, H, Nucleotide polymorphisms and the 5'-UTR transcriptional analysis of the bovine growth hormone secretagogue receptor 1a (GHSR1a ) gene, Animal Science Journal, 81, (5) pp. 530-550. ISSN 1344-3941 (2010) [Refereed Article] | |
| Charlesworth, JC and Curran, JE and Johnson, MP and Goring, HHH and Dyer, TD and Diego, VP and Kent Jr, JW and Mahaney, MC and Almasy, L and MacCluer, JW and Moses, EK and Blangero, J, Transcriptomic epidemiology of smoking: the effect of smoking on gene expression in lymphocytes , B M C Medical Genomics, 3, (29) EJ ISSN 1755-8794 (2010) [Refereed Article] | |
| Bellis, C and Cox, HC and Dyer, TD and Charlesworth, JC and Begley, KN and Quinlan, S and Lea, RA and Heath, SC and Blangero, J and Griffiths, LR, Linkage mapping of CVD risk traits in the isolated Norfolk Island population , Human Genetics, 124, (5) pp. 543-552. ISSN 0340-6717 (2008) [Refereed Article] | |
| Goring, HHH and Curran, JE and Johnson, MP and Dyer, TD and Charlesworth, JC and Cole, SA and Jowett, JBM and Abraham, LJ and Rainwater, DL and Comuzzie, AG and Mahaney, MC and Almasy, L and MacCluer, JW and Kissebah, AH and Collier, GR and Moses, EK and Blangero, J, Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes, Nature Genetics, 39, (10) pp. 1208-1216. ISSN 1061-4036 (2007) [Refereed Article] | |
| Miller, AD and Murphy, NP and Burridge, CP and Austin, CM, Complete Mitochondrial DNA Sequences of the Decapod Crustaceans Pseudocarcinus gigas (Menippidae) and Macrobrachium rosenbergii (Palaemonidae), Marine Biotechnology, 7, (4) pp. 339-349. ISSN 1436-2228 (2005) [Refereed Article] | |
| Miller, AD and Nguyen, TTT and Burridge, CP and Austin, CM, Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed, Gene: An International Journal Focusing on Gene Cloning and Gene Structure and Function, 331, (40210) pp. 65-72. ISSN 0378-1119 (2004) [Refereed Article] | |
| Myers, SA and Clements, JA, Kallikrein 4 (KLK4), A New Member of the Human Kallikrein Gene Family Is Upregulated By Estrogen and Progesterone in the Human Endometrial Cancer Cell Line, KLE, The Journal of Clinical Endocrinology & Metabolism, 86, (5) pp. 2323-2326. ISSN 0021-972X (2001) [Refereed Article] | |
| Harvey, TJ and Hoopert, JD and Myers, SA and Stephenson, S-A and Ashworth, L and Clements, JA, Tissue-specific Expression Patterns and Fine Mapping of the Human Kallikrein (KLK) Locus on Proximal 19q13.4, International Journal of Biological Chemistry, 275, (48) pp. 37397-37406. ISSN 1819-155X (2000) [Refereed Article] | |
