eCite Digital Repository

Items where Subject is Field of Research, Mathematical Sciences, Applied Mathematics, Biological Mathematics

Journal Article
Crotty, SM and Minh, BQ and Bean, NG and Holland, BR and Tuke, J and Jermiin, LS and von Haeseler, A, GHOST: Recovering historical signal from heterotachously-evolved sequence alignments, Systematic Biology Article syz051. ISSN 1063-5157 (2019) [Refereed Article]
Shi, P and Liu, M and Ratkowsky, DA and Gielis, J and Su, J and Yu, X and Wang, P and Zhang, L and Lin, Z and Schrader, J, Leaf area-length allometry and its implications in leaf shape evolution, Trees pp. 1-13. ISSN 1432-2285 (2019) [Refereed Article] 
Shi, P and Ratkowsky, DA and Li, Y and Zhang, L and Lin, S and Gielis, J, A general leaf area geometric formula exists for plants - evidence from the simplified Gielis equation, Forests, 9, (11) Article 714. ISSN 1999-4907 (2018) [Refereed Article]
Mitchell, JD and Sumner, JG and Holland, BR, Distinguishing between convergent evolution and violation of the molecular clock for three taxa, Systematic Biology, 67, (5) pp. 905-915. ISSN 1063-5157 (2018) [Refereed Article] 
Hadley, S and Wild-Allen, K and Johnson, C and Macleod, C, Investigation of broad scale implementation of integrated multitrophic aquaculture using a 3D model of an estuary, Marine Pollution Bulletin, 133 pp. 448-459. ISSN 0025-326X (2018) [Refereed Article] 
Sumner, JG and Woodhams, MD, Lie-Markov models derived from finite semigroups, Bulletin of Mathematical Biology, 81, (2) pp. 361-383. ISSN 0092-8240 (2018) [Refereed Article] 
Terauds, V and Sumner, J, Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach, Bulletin of Mathematical Biology, 81, (2) pp. 535-567. ISSN 0092-8240 (2018) [Refereed Article] 
Wang, P and Ratkowsky, DA and Xiao, X and Yu, X and Su, J and Zhang, L and Shi, P, Taylor's power law for leaf bilateral symmetry, Forests, 9, (8) Article 500. ISSN 1999-4907 (2018) [Refereed Article]
Denholm, L and Beeton, NJ and Forbes, LK and Carver, S, A model for the dynamics of Ross River Virus in the Australian environment, Letters in Biomathmatics, 4, (1) pp. 187-206. ISSN 2373-7867 (2017) [Refereed Article]
Sumner, JG and Jarvis, PD and Francis, AR, A representation-theoretic approach to the calculation of evolutionary distance in bacteria, Journal of Physics A: Mathematical and Theoretical, 50 Article 335601. ISSN 1751-8121 (2017) [Refereed Article] 
Sumner, JG and Taylor, A and Holland, BR and Jarvis, PD, Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants, Journal of Mathematical Biology, 75, (6-7) pp. 1619-1654. ISSN 0303-6812 (2017) [Refereed Article] 
Sumner, JG, Dimensional reduction for the General Markov Model on phylogenetic trees, Bulletin of Mathematical Biology, 79 pp. 619-634. ISSN 0092-8240 (2017) [Refereed Article] 
Serdoz, S and Egri-Nagy, A and Sumner, J and Holland, BR and Jarvis, PD and Tanaka, MM and Francis, AR, Maximum likelihood estimates of pairwise rearrangement distances, Journal of Theoretical Biology, 423 pp. 31-40. ISSN 0022-5193 (2017) [Refereed Article]
Sumner, JG, Multiplicatively closed Markov models must form Lie algebras, ANZIAM Journal, 59, (2) pp. 240-246. ISSN 1446-1811 (2017) [Refereed Article] 
Ratkowsky, DA, Choosing the number of principal coordinates when using CAP, the canonical analysis of principal coordinates, Austral Ecology, 41, (7) pp. 842-851. ISSN 1442-9985 (2016) [Refereed Article] 
Jarvis, PD and Sumner, JG, Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model, Journal of Mathematical Biology, 73 pp. 259-282. ISSN 0303-6812 (2016) [Refereed Article] 
Hadley, S and Wild-Allen, K and Johnson, C and MacLeod, C, Quantification of the impacts of finfish aquaculture and bioremediation capacity of integrated multi-trophic aquaculture using a 3D estuary model, Journal of Applied Phycology, 28, (3) pp. 1875-1889. ISSN 0921-8971 (2016) [Refereed Article] 
Woodhams, MD and Lockhart, PJ and Holland, BR, Simulating and summarizing sources of gene tree incongruence, Genome Biology and Evolution, 8, (5) pp. 1299-1315. ISSN 1759-6653 (2016) [Refereed Article] 
Fulton, EA and Boschetti, F and Sporcic, M and Jones, T and Little, LR and Dambacher, JM and Gray, R and Scott, R and Gorton, R, A multi-model approach to engaging stakeholder and modellers in complex environmental problems, Environmental Science and Policy, 48 pp. 44-56. ISSN 1462-9011 (2015) [Refereed Article] 
Woodhams, MD and Fernandez-Sanchez, J and Sumner, JG, A new hierarchy of phylogenetic models consistent with heterogeneous substitution rates, Systematic Biology, 64, (4) pp. 638-650. ISSN 1063-5157 (2015) [Refereed Article]
Fearnhead, P and Yu, S and Biggs, P and Holland, B and French, N, Estimating the relative rate of recombination to mutation in bacteria from single-locus variants using composite likelihood methods, The Annals of Applied Statistics, 9, (1) pp. 200-224. ISSN 1932-6157 (2015) [Refereed Article]
Fernandez-Sanchez, J and Sumner, JG and Jarvis, PD and Woodhams, MD, Lie Markov models with purine/pyrimidine symmetry, Journal of Mathematical Biology, 70, (4) pp. 855-891. ISSN 0303-6812 (2015) [Refereed Article] 
Hadley, SA and Wild-Allen, K and Johnson, CR and Macleod, C, Modeling macroalgae growth and nutrient dynamics for integrated multi-trophic aquaculture, Journal of Applied Phycology, 27, (2) pp. 901-916. ISSN 0921-8971 (2015) [Refereed Article] 
Wiff, R and Barrientos, MA and Milessi, AC and Quiroz, JC and Harwood, J, Modelling production per unit of food consumed in fish populations, Journal of Theoretical Biology, 365 pp. 67-75. ISSN 0022-5193 (2015) [Refereed Article] 
Larcombe, MJ and Holland, B and Steane, DA and Jones, RC and Nicolle, D and Vaillancourt, RE and Potts, BM, Patterns of reproductive isolation in Eucalyptus - a phylogenetic perspective, Molecular Biology and Evolution, 32, (7) pp. 1833-1846. ISSN 0737-4038 (2015) [Refereed Article] 
Zhang, N and Magee, BB and Magee, PT and Holland, BR and Rodrigues, E and Holmes, AR and Cannon, RD and Schmid, J, Selective advantages of a parasexual cycle for the yeast Candida albicans, Genetics, 200, (4) pp. 1117-1132. ISSN 1943-2631 (2015) [Refereed Article] 
O'Mara, A and Shahriar, MS, Short-term prediction of marine sensor data with fuzzy clustering, International Journal of Pattern Recognition and Artificial Intelligence, 29, (3) Article 1550015. ISSN 0218-0014 (2015) [Refereed Article] 
Sumner, JG and Jarvis, PD and Holland, BR, A tensorial approach to the inversion of group-based phylogenetic models, BMC Evolutionary Biology, 14 Article 236. ISSN 1471-2148 (2014) [Refereed Article]
Bruniche-Olsen, A and Jones, ME and Austin, JJ and Burridge, CP and Holland, BR, Extensive population decline in the Tasmanian devil predates European settlement and devil facial tumour disease, Biology Letters, 10, (11) Article 20140619. ISSN 1744-9561 (2014) [Refereed Article] 
Binney, BM and Biggs, PJ and Carter, PE and Holland, BR and French, NP, Quantification of historical livestock importation into New Zealand 1860-1979, New Zealand Veterinary Journal, 62, (6) pp. 309-314. ISSN 0048-0169 (2014) [Refereed Article] 
Mohan, V and Stevenson, M and Marshall, J and Fearnhead, P and Holland, BR and Hotter, G and French, NP, Campylobacter jejuni colonization and population structure in urban populations of ducks and starlings in New Zealand, MicrobiologyOpen, 2, (4) pp. 659-673. ISSN 2045-8827 (2013) [Refereed Article]
Sumner, JG, Lie geometry of 2 x 2 Markov matrices, Journal of Theoretical Biology, 327 pp. 88-90. ISSN 0022-5193 (2013) [Refereed Article] 
Holland, BR and Jarvis, PD and Sumner, JG, Low-parameter phylogenetic inference under the general Markov model, Systematic Biology, 62, (1) pp. 78-92. ISSN 1063-5157 (2013) [Refereed Article] 
Grievink, LS and Penny, D and Holland, BR, Missing data and influential sites: Choice of sites for phylogenetic analysis can be as important as taxon sampling and model choice, Genome Biology and Evolution, 5, (4) pp. 681-687. ISSN 1759-6653 (2013) [Refereed Article]
Woodhams, M and Steane, DA and Jones, RC and Nicolle, D and Moulton, V and Holland, BR, Novel distances for Dollo data, Systematic Biology, 62, (1) pp. 62-77. ISSN 1063-5157 (2013) [Refereed Article] 
Cox, MJ and Borchers, DL and Kelly, N, nupoint: an R package for density estimation from point transects in the presence of nonuniform animal density, Methods in Ecology and Evolution, 4, (6) pp. 589-594. ISSN 2041-210X (2013) [Refereed Article] 
Cox, MP and Holland, BR and Wilkins, MC and Schmid, J, Reconstructing past changes in locus-specific recombination rates, BMC Genetics, 14 Article 11. ISSN 1471-2156 (2013) [Refereed Article]
Allman, ES and Jarvis, PD and Rhodes, JA and Sumner, JG, Tensor rank, invariants, inequalities, and applications, Journal on Matrix Analysis and Applications, 34, (3) pp. 1014-1045. ISSN 0895-4798 (2013) [Refereed Article] 
Hartmann, K, The equivalence of two phylogenetic biodiversity measures: the Shapley value and Fair Proportion index, Journal of Mathematical Biology, 67, (5) pp. 1163-1170. ISSN 1432-1416 (2013) [Refereed Article] 
Blanke, A and Greve, C and Wipfler, B and Beutel, R and Holland, BR and Misof, B, The identification of concerted convergence in insect heads corroborates Palaeoptera, Systematic Biology, 62, (2) pp. 250-263. ISSN 1063-5157 (2013) [Refereed Article] 
Price, CA and Knox, S-JC and Brodribb, TJ, The influence of branch order on optimal leaf vein geometries: Murray's law and area preserving branching, PLOS One, 8, (12) Article e85420. ISSN 1932-6203 (2013) [Refereed Article]
Holland, BR, The rise of statistical phylogenetics, Australian and New Zealand Journal of Statistics, 55, (3) pp. 205-220. ISSN 1369-1473 (2013) [Refereed Article] 
Beeton, NJ and Forbes, LK, Dynamical systems analysis of a model describing Tasmanian devil facial tumour disease, The ANZIAM Journal, 54, (1-2) pp. 89-107. ISSN 1446-1811 (2012) [Refereed Article]
Yu, S and Fearnhead, P and Holland, BR and Biggs, P and Maiden, M and French, N, Estimating the relative roles of recombination and point mutation in the generation of single locus variants in Campylobacter jejuni and Campylobacter coli, Journal of Molecular Evolution, 74, (5-6) pp. 273-280. ISSN 0022-2844 (2012) [Refereed Article] 
Saurabh, K and Holland, BR and Gibb, GC and Penny, D, Gaps: an elusive source of phylogenetic information, Systematic Biology, 61, (6) pp. 1075-1082. ISSN 1063-5157 (2012) [Refereed Article]
Sumner, JG and Jarvis, PD and Fernandez-Sanchez, J and Kaine, BT and Woodhams, MD and Holland, BR, Is the general time-reversible model bad for molecular phylogenetics?, Systematic Biology, 61, (6) pp. 1069-1074. ISSN 1063-5157 (2012) [Refereed Article]
Sumner, JG and Fernandez-Sanchez, J and Jarvis, PD, Lie Markov models, Journal of Theoretical Biology, 298 pp. 16-31. ISSN 1095-8541 (2012) [Refereed Article]
Jarvis, PD and Sumner, JG, Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9, (3) pp. 828-836. ISSN 1545-5963 (2012) [Refereed Article]
Eytan, RI and Hastings, PA and Holland, BR and Hellberg, ME, Reconciling molecules and morphology: Molecular systematics and biogeography of Neotropical blennies (Acanthemblemaria), Molecular Phylogenetics and Evolution, 62, (1) pp. 159-173. ISSN 1055-7903 (2012) [Refereed Article]
Sumner, JG and Holland, BR and Jarvis, PD, The Algebra of the General Markov Model on Phylogenetic Trees and Networks, Bulletin of Mathematical Biology, 74, (4) pp. 858-880. ISSN 1522-9602 (2012) [Refereed Article]
Wiedenmann, J and Cresswell, KA and Goldbogen, J and Potvin, J and Mangel, M, Exploring the effects of reductions in krill biomass in the Southern Ocean on blue whales using a state-dependent foraging model, Ecological Modelling, 222, (18) pp. 3366-3379. ISSN 0304-3800 (2011) [Refereed Article] 
Castle, MD and Blanchard, JL and Jennings, S, Predicted effects of behavioural movement and passive transport on individual growth and community size structure in marine ecosystems, Advances in Ecological Research, 45 pp. 41-66. ISSN 0065-2504 (2011) [Refereed Article] 
Bednarek, AT and Cooper, AB and Cresswell, KA and Mangel, M and Satterthwaite, WH and Simpfendorfer, CA and Wiedenmann, JR, The certainty of uncertainty in marine conservation and what to do about it, Bulletin of Marine Science, 87, (2) pp. 177-195. ISSN 0007-4977 (2011) [Refereed Article]
Holland, BR and Spencer, HG and Worthy, TH and Kennedy, M, Identifying Cliques of Convergent Characters: Concerted Evolution in the Cormorants and Shags, Systematic Biology, 59, (4) pp. 433-445. ISSN 1063-5157 (2010) [Refereed Article]
Mangel, M and Richerson, K and Cresswell, KA and Wiedenmann, JR, Modelling the effects of UV radiation on the survival of Antarctic krill (Euphausia superba Dana) in the face of limited data, Ecological Modelling, 221, (17) pp. 2095-2101. ISSN 0304-3800 (2010) [Refereed Article] 
Sumner, JG and Charleston, M, Phylogenetic estimation with partial likelihood tensors, Journal of Theoretical Biology: An International Multidisciplinary Journal, 262, (3) pp. 413-424. ISSN 0022-5193 (2010) [Refereed Article]
Hartmann, K and Wong, D and Stadler, T, Sampling trees from evolutionary models, Systematic Biology, 59, (4) pp. 465-476. ISSN 1063-5157 (2010) [Refereed Article]
Wiedenmann, J and Cresswell, KA and Mangel, M, Connecting recruitment of Antarctic krill and sea ice, Limnology and Oceanography, 54, (3) pp. 799-811. ISSN 0024-3590 (2009) [Refereed Article] 
Cresswell, KA and Tarling, GA and Thorpe, SE and Burrows, MT and Wiedenmann, J and Mangel, M, Diel vertical migration of Antarctic krill (Euphausia superba) is flexible during advection across the Scotia Sea, Journal of Plankton Research, 31, (10) pp. 1265-1281. ISSN 0142-7873 (2009) [Refereed Article] 
Hadley, S and Forbes, LK, Dynamical systems analysis of a five-dimensional trophic food web model in the southern oceans, Journal of Applied Mathematics, 2009, (Article ID 575047) pp. 1-17. ISSN 1110-757X (2009) [Refereed Article]
Hadley, SA and Forbes, LK, Dynamical systems analysis of a five-dimensional trophic food web model in the Southern Oceans, Journal of Applied Mathematics, 2009 Article 575047. ISSN 1110-757X (2009) [Refereed Article]
Hadley, S and Forbes, LK, Dynamical systems analysis of a two level trophic food web in the Southern Oceans, ANZIAM Journal, 50, (Electronic Supplement) pp. E24-E55. ISSN 1446-8735 (2009) [Refereed Article]
Hadley, SA and Forbes, LK, Dynamical systems analysis of a two-level trophic food web in the Southern Ocean, ANZIAM Journal, 50 pp. E24-E55. ISSN 1446-8735 (2009) [Refereed Article] 
Barry, SI and Brown, SC, Modelling parasite density in ruminants, ANZIAM Journal, 50 pp. C696-C712. ISSN 1446-8735 (2009) [Refereed Article]
Johnston, BM and Johnston, PR and Kilpatrick, D, A solution method for the determination of cardiac potential distributions with an alternating current source, Computer Methods in Biomechanics and Biomedical Engineering, 11, (3) pp. 223-233. ISSN 1025-5842 (2008) [Refereed Article] 
Davie, A and Hartmann, K and Timms, G and DeGroot, M and McCulloch, J, Benthic habitat mapping with autonomous underwater vehicles, Oceans 2008, 2008, (2008) pp. 1-9. ISSN 1522-3167 (2008) [Refereed Article]
Redding, DW and Hartmann, K and Mimoto, A and Bokal, D and Devos, M and Mooers, AO, Evolutionarily distinctive species often capture more phylogenetic diversity than expected, Journal of Theoretical Biology: An International Multidisciplinary Journal, 251, (4) pp. 606-615. ISSN 0022-5193 (2008) [Refereed Article]
Holland, BR and Clarke, AC and Meudt, HM, Optimizing Automated AFLP Scoring Parameters to Improve Phylogenetic Resolution, Systematic Biology, 57, (3) pp. 347-366. ISSN 1063-5157 (2008) [Refereed Article]
Gernhard, T and Hartmann, K and Steel, M, Stochastic properties of generalised Yule models, with biodiversity applications, Journal of Theoretical Biology: An International Multidisciplinary Journal, 57, (5) pp. 713-735. ISSN 0022-5193 (2008) [Refereed Article]
Wiedenmann, J and Cresswell, K and Mangel, M, Temperature-dependent growth of Antarctic krill: predictions for a changing climate from a cohort model, Marine Ecology - Progress Series, 358 pp. 191-202. ISSN 0171-8630 (2008) [Refereed Article]
Holland, BR and Benthin, S and Lockhart, PJ and Moulton, V and Huber, KT, Using supernetworks to distinguish hybridization from lineage-sorting, BMC Evolutionary Biology, 8, (1) EJ ISSN 1471-2148 (2008) [Refereed Article]
Cresswell, KA and Tarling, GA and Burrows, MT, Behaviour affects local-scale distributions of Antarctic krill around South Georgia, Marine Ecology - Progress Series, 343 pp. 193-206. ISSN 0171-8630 (2007) [Refereed Article]
Holland, BR and Conner, G and Huber, K and Moulton, V, Imputing Supertrees and Supernetworks from Quartets, Systematic Biology, 56, (1) pp. 57-67. ISSN 1063-5157 (2007) [Refereed Article]
Shavit, L and Penny, D and Hendy, MD and Holland, BR, The Problem of Rooting Rapid Radiations, Molecular Biology and Evolution, 24, (11) pp. 2400-2411. ISSN 0737-4038 (2007) [Refereed Article]
Brown, SC, Two implications of common models of microbial growth, ANZIAM Journal, 49 pp. C230-C242. ISSN 1446-1811 (2007) [Refereed Article] 
Cresswell, KA and Tarling, GA and Trathan, PN, Weight loss during breeding is adaptive for female macaroni penguins, Eudyptes chrysolophus, Evolutionary Ecology Research, 9, (7) pp. 1053-1076. ISSN 1522-0613 (2007) [Refereed Article]
Pierson, MJ and Martinez-Arias, R and Holland, BR and Gemmell, NJ and Hurles, ME and Penny, D, Deciphering Past Human Population Movements in Oceania: Provably Optimal Trees of 127 mtDNA Genomes, Molecular Biology and Evolution, 23, (10) pp. 1966-1975. ISSN 0737-4038 (2006) [Refereed Article]
Auch, AF and Henz, SR and Holland, BR and Goker, M, Genome BLAST distance phylogenies inferred from whole plastic and whole mitochondrion genome sequences, BMC Bioinformatics, 7, (July) pp. 1-16. ISSN 1471-2105 (2006) [Refereed Article]
Hartmann, K and Steel, M, Maximizing phylogenetic diversity in biodiversity conservation: Greedy solutions to the Noah's Ark Problem, Systematic Biology, 55, (4) pp. 644-651. ISSN 1063-5157 (2006) [Refereed Article]
Holland, BR and Jermiin, LS and Moulton, V, Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005: Improved Consensus Network Techniques for Genome-Scale Phylogeny, Molecular Biology and Evolution, 23, (5) pp. 848-855. ISSN 0737-4038 (2006) [Refereed Article]
Dress, A and Holland, BR and Huber, KT and Koolen, JH and Moulton, V and Weyer-Menkhoff, J, Δ additive and Δ ultra-additive maps, Gromov's trees, and the Farris transform, Discrete Applied Mathematics: Combinatorial Operations Research and Computer Science, 146, (1) pp. 51-73. ISSN 0166-218X (2005) [Refereed Article] 
Stankovich, J and Bahlo, M and Rubio, JP and Wilkinson, CR and Thomson, RJ and Banks, A and Ring, M and Foote, SJ and Speed, TP, Identifying nineteenth century genealogical links from genotypes, Human Genetics, 117, (2-3) pp. 188-199. ISSN 0340-6717 (2005) [Refereed Article] 
Holland, BR and Schmid, J, Selecting representative model micro-organisms, BMC Microbiology, 5, (May) pp. 1-11. ISSN 1471-2105 (2005) [Refereed Article]
Holland, BR and Huber, KT and Penny, D and Moulton, V, The Min/Max Squeeze: Guaranteeing a Minimal Tree for Population Data, Molecular Biology and Evolution, 22, (2) pp. 235-242. ISSN 0737-4038 (2005) [Refereed Article]
Quinn, SJ, Annihilator Graphs and Semigroups of Matrices, Bulletin of the Australian Mathematical Society, 70, (1) pp. 1-6. ISSN 0004-9727 (2004) [Refereed Article] 
Corney, SP and Johnston, PR and Kilpatrick, D, Construction of realistic branched, three-dimensional arteries suitable for computational modelling of flow, Medical & Biological Engineering & Coputing, 42, (5) pp. 660-668. ISSN 0140-0118 (2004) [Refereed Article] 
Grist, EPM and Jackson, GD, Energy balance as a determinant of two-phase growth in cephalopods, Marine and Freshwater Research, 55, (4) pp. 395-401. ISSN 1323-1650 (2004) [Refereed Article] 
Johnston, BM and Johnston, PR and Corney, SP and Kilpatrick, D, Non-Newtonian blood flow in human right coronary arteries: steady state simulations, Journal of Biomechanics, 37, (5) pp. 709-720. ISSN 0021-9290 (2004) [Refereed Article] 
Holland, BR and Huber, KT and Moulton, V and Lockhart, PJ, Using Consensus Networks to Visualize Contradictory Evidence for Species Phylogeny, Molecular Biology and Evolution, 21, (7) pp. 1459-1461. ISSN 0737-4038 (2004) [Refereed Article]
Gardner, PP and Holland, BR and Moulton, V and Hendy, M and Penny, D, Optimal alphabets for an RNA world, Proceedings of the Royal Society of London, 270, (1520) pp. 1177-1182. ISSN 0370-1662 (2003) [Refereed Article]
Holland, BR and Penny, D and Hendy, MD, Outgroup Misplacement and Phylogenetic Inaccuracy Under a Molecular Clock-A Simulation Study, Systematic Biology, 52, (2) pp. 229-238. ISSN 1063-5157 (2003) [Refereed Article]
Johnston, PR and Kilpatrick, D, The Effect of Conductivity Values on ST Segment Shift in Subendocardial Ischaemia, IEEE Transactions on Biomedical Engineering, 50, (2) pp. 150-158. ISSN 0018-9294 (2003) [Refereed Article] 
Hendy, MD and Holland, BR, Upper bounds on maximum likelihood for phylogenetic trees, Bioinformatics, 19, (2) pp. ii66-ii72. ISSN 1367-4803 (2003) [Refereed Article]
Regan, HM and Colyvan, M and Burgman, MA, A taxonomy and treatment of uncertainty for ecology and conservation biology, Ecological Applications, 12, (2) pp. 618-628. ISSN 1051-0761 (2002) [Refereed Article] 
Holland, BR and Huber, KT and Dress, A and Moulton, V, a Plots: A Tool for Analyzing Phylogenetic Distance Data, Molecular Biology and Evolution, 19, (12) pp. 2051-2059. ISSN 0737-4038 (2002) [Refereed Article]
Chor, B and Hendy, MD and Holland, BR and Penny, D, Multiple Maxima of Likelihood in Phylogenetic Trees: An Analytic Approach, Molecular Biology and Evolution, 17, (10) pp. 1529-1541. ISSN 0737-4038 (2000) [Refereed Article]
FitzGerald, DG, The ubiquity of power functions, Biometrical Journal, 41, (1) pp. 111-118. ISSN 0323-3847 (1999) [Refereed Article] 
Thomson, RJ, Ages of mutations on a coalescent tree, Mathematical Biosciences, 153, (1) pp. 41-61. ISSN 0025-5564 (1998) [Refereed Article] 
Rixon, AJ and Johnson, CR and Jones, AS, Stability in paradigm biological systems, Journal of Australian Mathematical Socieity, 40 pp. 23-34. ISSN 0334-2700 (1998) [Refereed Article] 
Johnston, PR and Gulrajani, RM, A New Method for Regularization Parameter Determination in the Inverse Problem of Electrocardiography, IEEE Transactions on Biomedical Engineering, 44, (1) pp. 19-39. ISSN 0018-9294 (1997) [Refereed Article] 
Johnston, PR, The Laplacian Inverse Problem of Electrocardiography: An Eccentric Spheres Study, IEEE Transactions on Biomedical Engineering, 44, (7) pp. 539-548. ISSN 0018-9294 (1997) [Refereed Article] 
Johnston, PR, The potential for Laplacian maps to solve the inverse problem of electrocardiography, IEEE Transactons on Biomedical Engineering, 43, (4) pp. 384-393. ISSN 0018-9294 (1996) [Refereed Article] 
Tjin, SC and Kilpatrick, D and Johnston, PR, Evaluation of the two-fiber laser Doppler anemometer for in vivo blood flow measurements: Experimental and flow simulation results, Optical Engineering, 34, (2) pp. 460-469. ISSN 0091-3286 (1995) [Refereed Article] 
Johnston, PR and Kilpatrick, D, The inverse problem of electrocardiology: The performance of Inversion Techniques as a function of patient anatomy, Mathematical Biosciences, 126, (2) pp. 125-146. ISSN 0025-5564 (1995) [Refereed Article] 
Chapter in Book
Jarvis, PD and Holland, BR and Sumner, JG, Phylogenetic Invariants and Markov Invariants, Reference Module in Life Sciences, Elsevier, BD Roitberg (ed), Amsterdam, Netherlands, pp. 1-3. ISBN 9780128096338 (2017) [Revised Book Chapter]
Jarvis, PD and Holland, BR and Sumner, JG, Phylogenetic Invariants, Brenner's Encyclopedia of Genetics, Academic Press Ltd Elsevier Science Ltd, S Maloy, K Hughes (ed), United Kingdom, pp. 321-323. ISBN 978-0-08-096156-9 (2013) [Other Book Chapter]
Jarvis, PD and Bashford, JD, Spectroscopy of the genetic code, Quantum Aspects Of Life, Imperial College Press, Derek Abbott, Paul C W Davies and Arun K Pati (ed), London, pp. 147-186. ISBN 978-1-84816-253-2 (2008) [Research Book Chapter] 
Penny, D and Hendy, MD and Holland, BR, Phylogenetics: Parsimony, Networks, and Distance Methods, Handbook of Statistical Genetics, John Wiley & Sons, Ltd, DJ Balding, M Bishop and C Cannings (ed), West Sussex, England, pp. 489-532. ISBN 978-0-470-05830-5 (2007) [Revised Book Chapter] 
Review
Holland, BR, Book review - Molecular Evolution: A Statistical Approach, Systematic Biology, 64, (3) pp. 545-546. ISSN 1063-5157 (2015) [Review Single Work]
Holland, BR, Analysis of Phylogenetics and Evolution with R, Systematic Biology, 56, (4) pp. 694-696. (2007) [Review Single Work]
Conference Publication
Dunbabin, VM and Airey, M and Diggle, AJ and Renton, M and Rengel, Z and Armstrong, R and Chen, Y and Siddique, KHM, Simulating the interaction between plant roots, soil water and nutrient flows, and barriers and objects in soil using ROOTMAP, Proceedings of the 19th International Congress on Modelling and Simulation (MODSIM2011), 12-16 December 2011 , Perth Western Australia, pp. 1652-1658. ISBN 9780987214317 (2011) [Refereed Conference Paper]
Holland, BR and Moulton, V, Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees, Algorithms in Bioinformatics, 15-20 September 2003, Budapest, Hungary, pp. 165-176. ISBN 3-540-20076-2 (2003) [Refereed Conference Paper]
Johnston, BM and Johnston, PR and Corney, SP and Kilpatrick, D, Non Newtoniian blood flow in human coronary arteries: Steady state and transient simulations, Programme and Abstracts, 10-13 August 2003, Adelaide, pp. 94. (2003) [Conference Extract] 
Corney, SP and Johnston, PR and Kilpatrick, D, Validation of three dimensional reconstruction of coronary arteries, Programme and Abstracts, 10-13 August 2003, Adelaide, pp. 94. (2003) [Conference Extract] 
Rochford, PD and Pretto, JJ and Guy, PA and Johns, DP, A theoretical comparison of non-biological TLCO quality control methods for detection of gas analysis errors, Proceedings, 22-24 March 2002, Cairns, Queensland (2002) [Conference Extract] 
Rochford, PD and Jack, S and Cullin, A and Pretto, JJ and Guy, PA and Johns, DP, Interlaboratory comparison of biological and non-biological quality control methods for TLCO and VA measurements, Proceedings, 22-24 March 2002, Cairns, Queensland (2002) [Conference Extract] 
Chor, B and Hendy, MD and Holland, BR and Penny, D, Multiple Maxima of Likelihood in Phylogenetic Trees: An Analytic Approach, RECOMB 2000: Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 8-11 April 2000, Tokyo, Japan, pp. 108-117. ISBN 1-58113-186-0 (2000) [Refereed Conference Paper] 
Johnston, PR and Kilpatrick, D, The effect of the subcutaneous fat layer on the measurement of the surface Laplacian, Proceedings of the 2nd International Conference on Bioelectromagnetism, 15-18 February 1998, Melbourne, Australia, pp. 23-24. ISBN 0-7803-3867-7 (1998) [Refereed Conference Paper] 
Johnston, PR, Can Body Surface Laplacian Maps be used to Solve the Inverse Problem of Electrocardiography? in Building Bridges in Electrocardiology, 22nd International Congress on Electrocardiology, 25-29 June, 1995, Nijmegan, The Netherlands, pp. 162-163. (1995) [Refereed Conference Paper] 
Johnston, PR and Gulrajani, RM, Regularization parameter determination in the inverse ECG problem in Building Bridges in Electrocardiology, 22nd International Congress on Electrocardiology, 25-29 June, 1995, Nijmegan, The Netherlands, pp. 178-179. (1995) [Refereed Conference Paper] 
Johnston, PR, Solving the Inverse Problem of Electrocardiology using Body Surface Laplacian Mapping in Computer Simulations in Biomedicine, Third International Conference on Computer Simulations in Biomedicine, Southampton, United Kingdom, pp. 419-426. (1995) [Refereed Conference Paper] 
Thesis
Hadley, SA, Dynamical systems analysis of a two level trophic food web in the Southern Oceans (2009) [Masters Research] 
Holland, BR, Evolutionary analyses of large data sets: Trees and beyond (2001) [PhD] 
Other Public Output
Hadley, SA and MacLeod, C and Ross, J, A summary of the improvements in the latest version of DEPOMOD (NewDEPOMOD) as compared with earlier versions (DEPOMOD/AutoDEPOMOD), DPIPWE, Hobart, Tasmania (2018) [Government or Industry Research]
Hadley, SA and MacLeod, C and Ross, J, Nutrient Dispersion Modelling for Proposed Marine Finfish Farming Zones in Storm Bay, DPIPWE, Hobart, Tasmania (2018) [Government or Industry Research]
Hadley, SA and MacLeod, C and Ross, J, Nutrient Dispersion Modelling for Proposed Marine Finfish Farming Zones in Storm Bay: Addendum - 20k and 30k tonne scenarios, DPIPWE, Hobart, Tasmania (2018) [Government or Industry Research]

This list was generated on Sat Aug 24 11:50:35 2019.