## eCite Digital Repository

# Author: Sumner, JG (Dr Jeremy Sumner)

Number of items: **35**

Journal Article | |
---|---|

Shore, JA and Holland, BR and Sumner, JG and Nieselt, K and Wills, PR, The ancient operational code is embedded in the amino acid substitution matrix and aaRS phylogenies, Journal of Molecular Evolution, 88, (2) pp. 136-150. ISSN 0022-2844 (2020) [Refereed Article] | |

Shore, JA and Sumner, JG and Holland, BR, The impracticalities of multiplicativelyclosed codon models: a retreat to linear alternatives, Journal of Mathematical Biology pp. 1-25. ISSN 0303-6812 (2020) [Refereed Article] | |

Jarvis, PD and Sumner, JG, Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics, Journal of Physics A: Mathematical and Theoretical, 52, (45) Article 453001. ISSN 1751-8113 (2019) [Refereed Article] | |

Mitchell, JD and Sumner, JG and Holland, BR, Distinguishing between convergent evolution and violation of the molecular clock for three taxa, Systematic Biology, 67, (5) pp. 905-915. ISSN 1063-5157 (2018) [Refereed Article] | |

Sumner, JG and Woodhams, MD, Lie-Markov models derived from finite semigroups, Bulletin of Mathematical Biology, 81, (2) pp. 361-383. ISSN 0092-8240 (2018) [Refereed Article] | |

Terauds, V and Sumner, J, Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach, Bulletin of Mathematical Biology, 81, (2) pp. 535-567. ISSN 0092-8240 (2018) [Refereed Article] | |

Sumner, JG and Jarvis, PD and Francis, AR, A representation-theoretic approach to the calculation of evolutionary distance in bacteria, Journal of Physics A: Mathematical and Theoretical, 50 Article 335601. ISSN 1751-8121 (2017) [Refereed Article] | |

Sumner, JG and Taylor, A and Holland, BR and Jarvis, PD, Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants, Journal of Mathematical Biology, 75, (6-7) pp. 1619-1654. ISSN 0303-6812 (2017) [Refereed Article] | |

Sumner, JG, Dimensional reduction for the General Markov Model on phylogenetic trees, Bulletin of Mathematical Biology, 79 pp. 619-634. ISSN 0092-8240 (2017) [Refereed Article] | |

Serdoz, S and Egri-Nagy, A and Sumner, J and Holland, BR and Jarvis, PD and Tanaka, MM and Francis, AR, Maximum likelihood estimates of pairwise rearrangement distances, Journal of Theoretical Biology, 423 pp. 31-40. ISSN 0022-5193 (2017) [Refereed Article] | |

Sumner, JG, Multiplicatively closed Markov models must form Lie algebras, ANZIAM Journal, 59, (2) pp. 240-246. ISSN 1446-1811 (2017) [Refereed Article] | |

Jarvis, PD and Sumner, JG, Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model, Journal of Mathematical Biology, 73 pp. 259-282. ISSN 0303-6812 (2016) [Refereed Article] | |

Woodhams, MD and Fernandez-Sanchez, J and Sumner, JG, A new hierarchy of phylogenetic models consistent with heterogeneous substitution rates, Systematic Biology, 64, (4) pp. 638-650. ISSN 1063-5157 (2015) [Refereed Article] | |

Fernandez-Sanchez, J and Sumner, JG and Jarvis, PD and Woodhams, MD, Lie Markov models with purine/pyrimidine symmetry, Journal of Mathematical Biology, 70, (4) pp. 855-891. ISSN 0303-6812 (2015) [Refereed Article] | |

Sumner, JG and Jarvis, PD and Holland, BR, A tensorial approach to the inversion of group-based phylogenetic models, BMC Evolutionary Biology, 14 Article 236. ISSN 1471-2148 (2014) [Refereed Article] | |

Jarvis, PD and Sumner, JG, Adventures in invariant theory, ANZIAM Journal, 56, (2) pp. 105-115. ISSN 1446-1811 (2014) [Refereed Article] | |

Sumner, JG, Lie geometry of 2 x 2 Markov matrices, Journal of Theoretical Biology, 327 pp. 88-90. ISSN 0022-5193 (2013) [Refereed Article] | |

Holland, BR and Jarvis, PD and Sumner, JG, Low-parameter phylogenetic inference under the general Markov model, Systematic Biology, 62, (1) pp. 78-92. ISSN 1063-5157 (2013) [Refereed Article] | |

Allman, ES and Jarvis, PD and Rhodes, JA and Sumner, JG, Tensor rank, invariants, inequalities, and applications, Journal on Matrix Analysis and Applications, 34, (3) pp. 1014-1045. ISSN 0895-4798 (2013) [Refereed Article] | |

Sumner, JG and Jarvis, PD and Fernandez-Sanchez, J and Kaine, BT and Woodhams, MD and Holland, BR, Is the general time-reversible model bad for molecular phylogenetics?, Systematic Biology, 61, (6) pp. 1069-1074. ISSN 1063-5157 (2012) [Refereed Article] | |

Sumner, JG and Fernandez-Sanchez, J and Jarvis, PD, Lie Markov models, Journal of Theoretical Biology, 298 pp. 16-31. ISSN 1095-8541 (2012) [Refereed Article] | |

Jarvis, PD and Sumner, JG, Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9, (3) pp. 828-836. ISSN 1545-5963 (2012) [Refereed Article] | |

Sumner, JG and Holland, BR and Jarvis, PD, The Algebra of the General Markov Model on Phylogenetic Trees and Networks, Bulletin of Mathematical Biology, 74, (4) pp. 858-880. ISSN 1522-9602 (2012) [Refereed Article] | |

Sumner, JG and Charleston, M, Phylogenetic estimation with partial likelihood tensors, Journal of Theoretical Biology: An International Multidisciplinary Journal, 262, (3) pp. 413-424. ISSN 0022-5193 (2010) [Refereed Article] | |

Sumner, JG and Jarvis, PD, Markov invariants and the isotropy subgroup of a quartet tree, Journal of Theoretical Biology, 258, (2) pp. 302-310. ISSN 0022-5193 (2009) [Refereed Article] | |

Sumner, JG and Charleston, MA and Jermiin, LS and Jarvis, PD, Markov invariants, plethysms, and phylogenetics, Journal of Theoretical Biology, 253, (3) pp. 601-615. ISSN 0022-5193 (2008) [Refereed Article] | |

Sumner, JG and Jarvis, PD, Erratum-Entanglement invariants and phylogenetic branching, Journal of Mathematical Biology, 53, (3) pp. 490. ISSN 0303-6812 (2006) [Letter or Note in Journal] | |

Sumner, JG and Jarvis, PD, Using the tangle: A consistent construction of phylogenetic distance matrices for quartets, Mathematical Biosciences, 204, (1) pp. 49-67. ISSN 0025-5564 (2006) [Refereed Article] | |

Sumner, JG and Jarvis, PD, Entanglement invariants and phylogenetic branching, Journal of Mathematical Biology, 51, (1) pp. 18-36. ISSN 0303-6812 (2005) [Refereed Article] | |

Jarvis, PD and Bashford, JD and Sumner, JG, Path integral formulation and Feynman rules for phylogenetic branching models, Journal of Physics A: Mathematical and General, 38, (44) pp. 9621-9647. ISSN 0305-4470 (2005) [Refereed Article] | |

Bashford, JD and Jarvis, PD and Sumner, JG and Steel, MA, U(1) U(1) U(1) symmetry of the Kimura 3ST model and phylogenetic branching processes, Journal of Physics A-Mathematical and General, 37, (8) pp. L81-L89. ISSN 0305-4470 (2004) [Refereed Article] |

Chapter in Book | |
---|---|

Jarvis, PD and Holland, BR and Sumner, JG, Phylogenetic Invariants and Markov Invariants, Reference Module in Life Sciences, Elsevier, BD Roitberg (ed), Amsterdam, Netherlands, pp. 1-3. ISBN 9780128096338 (2017) [Revised Book Chapter] | |

Jarvis, PD and Holland, BR and Sumner, JG, Phylogenetic Invariants, Brenner's Encyclopedia of Genetics, Academic Press Ltd Elsevier Science Ltd, S Maloy, K Hughes (ed), United Kingdom, pp. 321-323. ISBN 978-0-08-096156-9 (2013) [Other Book Chapter] |

Conference Publication | |
---|---|

Humphries, MA and Holland, BR and Karpievitch, YV and Sumner, JG, To gamma or not to gamma? Testing the fit of rates-across-sites models, Phylomania 2012, 8-9 November 2012, University of Tasmania, Hobart, pp. 7. (2012) [Conference Extract] |

Thesis | |
---|---|

Sumner, JG, Entanglement, Invariants, and Phylogenetics (2006) [PhD] |

This list was generated on **Thu Mar 4 20:42:56 2021**.