Number of items: 49

Journal Article
Sykes, J and Holland, BR and Charleston, MA, Benchmarking methods of protein structure alignment, Journal of Molecular Evolution, 88, (7) pp. 575-597. ISSN 0022-2844 (2020) [Refereed Article]
KVSN, RR and Montgomery, J and Garg, S and Charleston, M, Bioacoustics data analysis - a taxonomy, survey and open challenges, IEEE Access, 8 pp. 57684-57708. ISSN 2169-3536 (2020) [Refereed Article]
Clarke, LJ and Jones, PJ and Ammitzboll, H and Barmuta, LA and Breed, MF and Chariton, A and Charleston, M and Dakwa, V and Dewi, F and Eri, R and Fountain-Jones, NM and Freeman, J and Kendal, D and McDougal, R and Raes, EJ and Sow, SLS and Staples, T and Sutcliffe, B and Vemuri, R and Weyrich, LS and Flies, EJ, Mainstreaming microbes across biomes, Bioscience pp. 1-8. ISSN 0006-3568 (2020) [Refereed Article]
Koolhof, IS and Gibney, KB and Bettiol, SS and Charleston, M and Wiethoelter, A and Arnold, A-L and Campbell, PT and Neville, PJ and Aung, P and Shiga, T and Carver, S and Firestone, SM, The forecasting of dynamical Ross River virus outbreaks: Victoria, Australia, Epidemics ISSN 1755-4365 (2019) [Refereed Article]
Lihoreau, M and Charleston, MA and Senior, AM and Clissold, FJ and Raubenheimer, D and Simpson, SJ and Buhl, J, Collective foraging in spatially complex nutritional environments, Philosophical Transactions of the Royal Society B-Biological Sciences, 372, (1727) Article 20160238. ISSN 0962-8436 (2017) [Refereed Article]
Nahar, A and Baker, AL and Charleston, MA and Britz, ML, Draft Genome Sequence of Subantarctic Rhodococcus sp. Strain 1139, Genome Announcements, 5, (14) Article e00090-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal]
Nahar, A and Baker, AL and Charleston, MA and Bowman, JP and Britz, ML, Draft genome sequences of three sub-Antarctic Rhodococcus spp., including two novel psychrophilic genomospecies, Genome Announcements, 5, (36) Article e00898-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal]
Nahar, A and Baker, AL and Charleston, M and Bowman, JP and Britz, ML, Draft genome sequences of two novel sub-Antarctic Williamsia species, Genome Announcements, 5, (41) Article e01047-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal]
Fraser, TA and Shao, R and Fountain-Jones, NM and Charleston, M and Martin, A and Whiteley, P and Holme, R and Carver, S and Polkinghorne, A, Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials, BMC Evolutionary Biology, 17, (1) Article 233. ISSN 1471-2148 (2017) [Refereed Article]
Senior, AM and Lihoreau, M and Charleston, MA and Buhl, J and Raubenheimer, D and Simpson, SJ, Adaptive collective foraging in groups with conflicting nutritional needs, Royal Society Open Science, 3 Article 150638. ISSN 2054-5703 (2016) [Refereed Article]
Hoyal Cuthill, JF and Sewell, KB and Cannon, LRG and Charleston, MA and Lawler, S and Littlewood, DTJ and Olson, PD and Blair, D, Australian spiny mountain crayfish and their temnocephalan ectosymbionts: an ancient association on the edge of coextinction?, Proceedings of the Royal Society of London: Biological Sciences, 283, (1831) Article 20160585. ISSN 0962-8452 (2016) [Refereed Article]
McGrane, M and Charleston, MA, Biological Network Edit Distance, Journal of Computational Biology, 23, (9) pp. 776-788. ISSN 1066-5277 (2016) [Refereed Article]
Deshpande, V and Wang, Q and Greenfield, P and Charleston, M and Porras-Alfaro, A and Kuske, CR and Cole, JR and Midgley, DJ and Tran-Dinh, N, Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences, Mycologia, 108, (1) pp. 1-5. ISSN 0027-5514 (2016) [Refereed Article]
Drinkwater, B and Charleston, MA, RASCAL: A randomized approach for coevolutionary analysis, Journal of Computational Biology, 23, (3) pp. 218-227. ISSN 1066-5277 (2016) [Refereed Article]
Fraser, TA and Charleston, M and Martin, A and Polkinghorne, A and Carver, S, The emergence of sarcoptic mange in Australian wildlife: an unresolved debate, Parasites and Vectors, 9, (1) Article 316. ISSN 1756-3305 (2016) [Refereed Article]
Drinkwater, B and Charleston, MA, Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem, Algorithms for Molecular Biology, 11, (1) Article 15. ISSN 1748-7188 (2016) [Refereed Article]
Drinkwater, B and Qiao, A and Charleston, MA, WiSPA: a new approach for dealing with widespread parasitism, Quantitative Biology pp. 1-57. ISSN 2095-4697 (2016) [Non Refereed Article]
Drinkwater, B and Charleston, M, A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model, Computational Biology and Chemistry, 57 pp. 61-71. ISSN 1476-9271 (2015) [Refereed Article]
Senior, AM and Charleston, MA and Lihoreau, M and Buhl, J and Raubenheimer, D and Simpson, SJ, Evolving nutritional strategies in the presence of competition: a geometric agent-based model, PLoS Computational Biology, 11, (3) Article e1004111. ISSN 1553-734X (2015) [Refereed Article]
Kamali, AH and Giannoulatou, E and Chen, TY and Charleston, MA and McEwan, AL and Ho, JWK, How to test bioinformatics software?, Biophysical Reviews, 7, (3) pp. 343-352. ISSN 1867-2450 (2015) [Refereed Article]
Radu, A and Charleston, M, Node handprinting: a scalable and accurate algorithm for aligning multiple biological networks, Journal of Computational Biology, 22, (7) pp. 687-697. ISSN 1066-5277 (2015) [Refereed Article]
Lihoreau, M and Buhl, J and Charleston, MA and Sword, GA and Raubenheimer, D and Simpson, SJ, Nutritional ecology beyond the individual: a conceptual framework for integrating nutrition and social interactions, Ecology Letters, 18, (3) pp. 273-286. ISSN 1461-023X (2015) [Refereed Article]
Willet, CE and Haase, B and Charleston, MA and Wade, CM, Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker, Bioinformatics, 31, (4) pp. 599-601. ISSN 1367-4803 (2015) [Refereed Article]
Hoyal Cuthill, JF and Charleston, M, Wing patterning genes and coevolution of Müllerian mimicry in Heliconius butterflies: support from phylogeography, cophylogeny, and divergence times, Evolution, 69, (12) pp. 3082-3096. ISSN 0014-3820 (2015) [Refereed Article]
Drinkwater, B and Charleston, MA, An improved node mapping algorithm for the cophylogeny reconstruction problem, Coevolution: An Open Access Journal, 2, (1) pp. 1-17. ISSN 2325-6214 (2014) [Refereed Article]
Drinkwater, B and Charleston, MA, Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem, BMC Bioinformatics, 15, (Suppl 16: S14) pp. 1-15. ISSN 1471-2105 (2014) [Refereed Article]
Lihoreau, M and Buhl, J and Charleston, MA and Sword, GA and Raubenheimer, D and Simpson, SJ, Modelling nutrition across organizational levels: from individuals to superorganisms, Journal of Insect Physiology, 69 pp. 2-11. ISSN 0022-1910 (2014) [Refereed Article]
Radu, A and Charleston, M, Node fingerprinting: an efficient heuristic for aligning biological networks, Journal of Computational Biology, 21, (10) pp. 760-770. ISSN 1066-5277 (2014) [Refereed Article]
Cuthill, JH and Charleston, MA, A simple model explains the dynamics of preferential host switching among mammal RNA viruses, Evolution, 67, (4) pp. 980-990. ISSN 0014-3820 (2013) [Refereed Article]
Lichtenstein, I and Charleston, MA and Caetano, TS and Gamble, JR and Vadas, MA, Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies, Bioinformatics, 14 Article 59. ISSN 1367-4803 (2013) [Refereed Article]
Cuthill, JH and Charleston, M, Phylogenetic codivergence supports coevolution of mimetic Heliconius butterflies, PLoS One, 7, (5) Article e36464. ISSN 1932-6203 (2012) [Refereed Article]
Nascimento, FF and Gongora, J and Charleston, M and Tristem, M and Lowden, S and Moran, C, Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species, Bmc Evolutionary Biology, 11 Article 139. ISSN 1471-2148 (2011) [Refereed Article]
Ho, JWK and Charleston, MA, Network modelling of gene regulation, Biophysical Reviews, 3, (1) pp. 1-13. ISSN 1867-2450 (2011) [Refereed Article]
Sadi, MS and Kuo, F-C and Ho, JWK and Charleston, MA and Chen, TY, Verification of phylogenetic inference programs using metamorphic testing, Journal of Bioinformatics and Computational Biology, 9, (6) pp. 729-747. ISSN 0219-7200 (2011) [Refereed Article]
Page, RDM and Charleston, MA, From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem, Molecular Phylogenetics and Evolution, 7, (2) pp. 231-240. ISSN 1055-7903 (1997) [Refereed Article]

Chapter in Book
Charleston, M, Phylogeny, Reference Module in Life Sciences (LIFE), Elsevier, USA, pp. 1-4. ISBN 9780128096338 (2017) [Research Book Chapter]
Charleston, MA, Cospeciation, Encyclopedia of Evolutionary Biology, Netherlands, RM Kliman (ed), Elsevier, pp. 381-386. ISBN 978-0-12-800426-5 (2016) [Other Book Chapter]
Charleston, M and Libeskind-Hadas, R, Event-Based Cophylogenetic Comparative Analysis, Modern Phylogenetic Comparative Methods and their Application in Evolutionary Biology, Springer, LZ Garamszegi (ed), Germany, pp. 465-480. ISBN 978-3-662-43549-6 (2014) [Research Book Chapter]

Conference Publication
Koolhof, IS and Bettiol, S and Charleston, M and Firestone, S and Golding, N and Carver, S, Ecology and epidemiology of vector-borne disease dynamics across Australia, Ross River virus, 2019 Wildlife Disease Association Australasia Conference, 29 September - 4 October 2019, Little Swanport, Tasmania (2019) [Conference Extract]
Koolhof, I and Bettiol, S and Carver, S and Charleston, M and Firestone, S and Golding, N, Ecology and Control of Vector-Borne Disease Dynamics Across Australia, Presentation to the Tasmanian Department of Health and Human Services, Hobart, Tasmania (2018) [Keynote Presentation]
Koolhof, I and Bettiol, SS and Carver, SS and Charleston, M and Firestone, S and Golding, N, Ecology and Control of Vector-Borne Disease Dynamics Across Australia, Presentation at Hokkaido University, Faculty of Fisheries, Hokkaido, Japan (2018) [Keynote Presentation]
Koolhof, I and Bettiol, S and Carver, S and Charleston, M and Firestone, S and Golding, N, Ecology and Control of Vector-borne Disease Dynamics Across Australia, Presentation at the Tasmanian branch meeting for the Australian Society of Parasitology, Hobart, Tasmania (2018) [Keynote Presentation]
Koolhof, I and Bettiol, S and Carver, S and Charleston, M and Firestone, S and Golding, N, Ecology and control of vector-borne disease dynamics across Australia, Talk presented to University of Melbourne, Department of BioSciences, Melbourne, Australia (2018) [Keynote Presentation]
Koolhof, I and Bettiol, S and Carver, S and Charleston, M and Firestone, S and Golding, N, Ecology and epidemiology of vector-borne disease dynamics across Australia, Ross River virus, Proceedings from the 13th Mosquito Control Association of Australia Conference, 2-5 September 2018, Kingscliff, NSW, pp. 1-26. (2018) [Conference Extract]
Gramoli, V and Charleston, M and Jeffries, B and Koprinska, I and McGrane, M and Radu, A and Viglas, A and Yacef, K, Mining autograding data in computer science education, Proceedings of the Australasian Computer Science Week Multiconference, 02-05 February 2016, Canberra, Australia, pp. 1-10. ISBN 978-1-4503-4042-7 (2016) [Refereed Conference Paper]
Drinkwater, B and Charleston, MA, A sub-quadratic time and space complexity solution for the dated tree reconciliation problem for select tree topologies, Algorithms in Bioinformatics 15th International Workshop, WABI 2015 Proceedings, 10-12 September 2015, Atlanta, USA, pp. 93-107. ISBN 978-3-662-48220-9 (2015) [Refereed Conference Paper]
Gluga, R and Kay, J and Lister, R and Simon, S and Charleston, M and Harland, J and Teague, D, A conceptual model for reflecting on expected learning vs. demonstrated student performance, Proceedings of the 15th Australasian Computing Education Conference (ACE2013), January - February 2013, Adelaide, South Australia, pp. 1-10. (2013) [Refereed Conference Paper]

Entry
Charleston, MA, Cospeciation, Encyclopedia of Evolutionary Biology, R Kliman (ed), USA, 1 (2016) [Entry]
Charleston, M, Phylogeny, Brenner's Encyclopedia of Genetics, S Maloy, K Hughes (ed), London, 5, pp. 324-325 (2013) [Entry]

This list was generated on Sun Feb 28 21:59:30 2021.