Journal Article |
Sykes, J and Holland, BR and Charleston, MA, Benchmarking methods of protein structure alignment, Journal of Molecular Evolution, 88, (7) pp. 575-597. ISSN 0022-2844 (2020) [Refereed Article] | |
KVSN, RR and Montgomery, J and Garg, S and Charleston, M, Bioacoustics data analysis - a taxonomy, survey and open challenges, IEEE Access, 8 pp. 57684-57708. ISSN 2169-3536 (2020) [Refereed Article] |  |
Clarke, LJ and Jones, PJ and Ammitzboll, H and Barmuta, LA and Breed, MF and Chariton, A and Charleston, M and Dakwa, V and Dewi, F and Eri, R and Fountain-Jones, NM and Freeman, J and Kendal, D and McDougal, R and Raes, EJ and Sow, SLS and Staples, T and Sutcliffe, B and Vemuri, R and Weyrich, LS and Flies, EJ, Mainstreaming microbes across biomes, Bioscience pp. 1-8. ISSN 0006-3568 (2020) [Refereed Article] | |
Koolhof, IS and Gibney, KB and Bettiol, SS and Charleston, M and Wiethoelter, A and Arnold, A-L and Campbell, PT and Neville, PJ and Aung, P and Shiga, T and Carver, S and Firestone, SM, The forecasting of dynamical Ross River virus outbreaks: Victoria, Australia, Epidemics ISSN 1755-4365 (2019) [Refereed Article] |  |
Lihoreau, M and Charleston, MA and Senior, AM and Clissold, FJ and Raubenheimer, D and Simpson, SJ and Buhl, J, Collective foraging in spatially complex nutritional environments, Philosophical Transactions of the Royal Society B-Biological Sciences, 372, (1727) Article 20160238. ISSN 0962-8436 (2017) [Refereed Article] | |
Nahar, A and Baker, AL and Charleston, MA and Britz, ML, Draft Genome Sequence of Subantarctic Rhodococcus sp. Strain 1139, Genome Announcements, 5, (14) Article e00090-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal] |  |
Nahar, A and Baker, AL and Charleston, MA and Bowman, JP and Britz, ML, Draft genome sequences of three sub-Antarctic Rhodococcus spp., including two novel psychrophilic genomospecies, Genome Announcements, 5, (36) Article e00898-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal] |  |
Nahar, A and Baker, AL and Charleston, M and Bowman, JP and Britz, ML, Draft genome sequences of two novel sub-Antarctic Williamsia species, Genome Announcements, 5, (41) Article e01047-17. ISSN 2169-8287 (2017) [Contribution to Refereed Journal] |  |
Fraser, TA and Shao, R and Fountain-Jones, NM and Charleston, M and Martin, A and Whiteley, P and Holme, R and Carver, S and Polkinghorne, A, Mitochondrial genome sequencing reveals potential origins of the scabies mite Sarcoptes scabiei infesting two iconic Australian marsupials, BMC Evolutionary Biology, 17, (1) Article 233. ISSN 1471-2148 (2017) [Refereed Article] |  |
Senior, AM and Lihoreau, M and Charleston, MA and Buhl, J and Raubenheimer, D and Simpson, SJ, Adaptive collective foraging in groups with conflicting nutritional needs, Royal Society Open Science, 3 Article 150638. ISSN 2054-5703 (2016) [Refereed Article] |  |
Hoyal Cuthill, JF and Sewell, KB and Cannon, LRG and Charleston, MA and Lawler, S and Littlewood, DTJ and Olson, PD and Blair, D, Australian spiny mountain crayfish and their temnocephalan ectosymbionts: an ancient association on the edge of coextinction?, Proceedings of the Royal Society of London: Biological Sciences, 283, (1831) Article 20160585. ISSN 0962-8452 (2016) [Refereed Article] | |
McGrane, M and Charleston, MA, Biological Network Edit Distance, Journal of Computational Biology, 23, (9) pp. 776-788. ISSN 1066-5277 (2016) [Refereed Article] | |
Deshpande, V and Wang, Q and Greenfield, P and Charleston, M and Porras-Alfaro, A and Kuske, CR and Cole, JR and Midgley, DJ and Tran-Dinh, N, Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences, Mycologia, 108, (1) pp. 1-5. ISSN 0027-5514 (2016) [Refereed Article] | |
Drinkwater, B and Charleston, MA, RASCAL: A randomized approach for coevolutionary analysis, Journal of Computational Biology, 23, (3) pp. 218-227. ISSN 1066-5277 (2016) [Refereed Article] |  |
Fraser, TA and Charleston, M and Martin, A and Polkinghorne, A and Carver, S, The emergence of sarcoptic mange in Australian wildlife: an unresolved debate, Parasites and Vectors, 9, (1) Article 316. ISSN 1756-3305 (2016) [Refereed Article] |  |
Drinkwater, B and Charleston, MA, Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem, Algorithms for Molecular Biology, 11, (1) Article 15. ISSN 1748-7188 (2016) [Refereed Article] |  |
Drinkwater, B and Qiao, A and Charleston, MA, WiSPA: a new approach for dealing with widespread parasitism, Quantitative Biology pp. 1-57. ISSN 2095-4697 (2016) [Non Refereed Article] |  |
Drinkwater, B and Charleston, M, A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model, Computational Biology and Chemistry, 57 pp. 61-71. ISSN 1476-9271 (2015) [Refereed Article] |  |
Senior, AM and Charleston, MA and Lihoreau, M and Buhl, J and Raubenheimer, D and Simpson, SJ, Evolving nutritional strategies in the presence of competition: a geometric agent-based model, PLoS Computational Biology, 11, (3) Article e1004111. ISSN 1553-734X (2015) [Refereed Article] |  |
Kamali, AH and Giannoulatou, E and Chen, TY and Charleston, MA and McEwan, AL and Ho, JWK, How to test bioinformatics software?, Biophysical Reviews, 7, (3) pp. 343-352. ISSN 1867-2450 (2015) [Refereed Article] | |
Radu, A and Charleston, M, Node handprinting: a scalable and accurate algorithm for aligning multiple biological networks, Journal of Computational Biology, 22, (7) pp. 687-697. ISSN 1066-5277 (2015) [Refereed Article] |  |
Lihoreau, M and Buhl, J and Charleston, MA and Sword, GA and Raubenheimer, D and Simpson, SJ, Nutritional ecology beyond the individual: a conceptual framework for integrating nutrition and social interactions, Ecology Letters, 18, (3) pp. 273-286. ISSN 1461-023X (2015) [Refereed Article] |  |
Willet, CE and Haase, B and Charleston, MA and Wade, CM, Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker, Bioinformatics, 31, (4) pp. 599-601. ISSN 1367-4803 (2015) [Refereed Article] | |
Hoyal Cuthill, JF and Charleston, M, Wing patterning genes and coevolution of Müllerian mimicry in Heliconius butterflies: support from phylogeography, cophylogeny, and divergence times, Evolution, 69, (12) pp. 3082-3096. ISSN 0014-3820 (2015) [Refereed Article] | |
Drinkwater, B and Charleston, MA, An improved node mapping algorithm for the cophylogeny reconstruction problem, Coevolution: An Open Access Journal, 2, (1) pp. 1-17. ISSN 2325-6214 (2014) [Refereed Article] |  |
Drinkwater, B and Charleston, MA, Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem, BMC Bioinformatics, 15, (Suppl 16: S14) pp. 1-15. ISSN 1471-2105 (2014) [Refereed Article] |  |
Lihoreau, M and Buhl, J and Charleston, MA and Sword, GA and Raubenheimer, D and Simpson, SJ, Modelling nutrition across organizational levels: from individuals to superorganisms, Journal of Insect Physiology, 69 pp. 2-11. ISSN 0022-1910 (2014) [Refereed Article] | |
Radu, A and Charleston, M, Node fingerprinting: an efficient heuristic for aligning biological networks, Journal of Computational Biology, 21, (10) pp. 760-770. ISSN 1066-5277 (2014) [Refereed Article] | |
Cuthill, JH and Charleston, MA, A simple model explains the dynamics of preferential host switching among mammal RNA viruses, Evolution, 67, (4) pp. 980-990. ISSN 0014-3820 (2013) [Refereed Article] | |
Lichtenstein, I and Charleston, MA and Caetano, TS and Gamble, JR and Vadas, MA, Active subnetwork recovery with a mechanism-dependent scoring function; with application to angiogenesis and organogenesis studies, Bioinformatics, 14 Article 59. ISSN 1367-4803 (2013) [Refereed Article] |  |
Cuthill, JH and Charleston, M, Phylogenetic codivergence supports coevolution of mimetic Heliconius butterflies, PLoS One, 7, (5) Article e36464. ISSN 1932-6203 (2012) [Refereed Article] |  |
Nascimento, FF and Gongora, J and Charleston, M and Tristem, M and Lowden, S and Moran, C, Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species, Bmc Evolutionary Biology, 11 Article 139. ISSN 1471-2148 (2011) [Refereed Article] |  |
Ho, JWK and Charleston, MA, Network modelling of gene regulation, Biophysical Reviews, 3, (1) pp. 1-13. ISSN 1867-2450 (2011) [Refereed Article] | |
Sadi, MS and Kuo, F-C and Ho, JWK and Charleston, MA and Chen, TY, Verification of phylogenetic inference programs using metamorphic testing, Journal of Bioinformatics and Computational Biology, 9, (6) pp. 729-747. ISSN 0219-7200 (2011) [Refereed Article] |  |
Page, RDM and Charleston, MA, From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem, Molecular Phylogenetics and Evolution, 7, (2) pp. 231-240. ISSN 1055-7903 (1997) [Refereed Article] | |