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Age-dependent speciation can explain the shape of empirical phylogenies

Citation

Hagen, O and Hartmann, K and Steel, M and Stadler, T, Age-dependent speciation can explain the shape of empirical phylogenies, Systematic Biology, 64, (3) pp. 432-440. ISSN 1063-5157 (2015) [Refereed Article]


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Licensed under Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) http://creativecommons.org/licenses/by-nc/4.0/

DOI: doi:10.1093/sysbio/syv001

Abstract

Tens of thousands of phylogenetic trees, describing the evolutionary relationships between hundreds of thousands of taxa, are readily obtainable from various databases. From such trees, inferences can be made about the underlying macroevolutionary processes, yet remarkably these processes are still poorly understood. Simple and widely used evolutionary null models are problematic: Empirical trees show very different imbalance between the sizes of the daughter clades of ancestral taxa compared to what models predict. Obtaining a simple evolutionary model that is both biologically plausible and produces the imbalance seen in empirical trees is a challenging problem, to which none of the existing models provide a satisfying answer. Here we propose a simple, biologically plausible macroevolutionary model in which the rate of speciation decreases with species age, whereas extinction rates can vary quite generally.We show that this model provides a remarkable fit to the thousands of trees stored in the online database TreeBase. The biological motivation for the identified age-dependent speciation process may be that recently evolved taxa often colonize new regions or niches and may initially experience little competition. These new taxa are thus more likely to give rise to further new taxa than a taxon that has remained largely unchanged and is, therefore, well adapted to its niche. We show that age-dependent speciation may also be the result of different within-species populations following the same laws of lineage splitting to produce new species. As the fit of our model to the tree database shows, this simple biological motivation provides an explanation for a long standing problem in macroevolution.

Item Details

Item Type:Refereed Article
Keywords:evolutionary biology, phylogenetics, birth–death process, diversification, macroevolution, stochastic models
Research Division:Biological Sciences
Research Group:Genetics
Research Field:Population, Ecological and Evolutionary Genetics
Objective Division:Expanding Knowledge
Objective Group:Expanding Knowledge
Objective Field:Expanding Knowledge in the Biological Sciences
Author:Hartmann, K (Dr Klaas Hartmann)
ID Code:99107
Year Published:2015
Web of Science® Times Cited:17
Deposited By:IMAS Research and Education Centre
Deposited On:2015-03-13
Last Modified:2017-11-01
Downloads:135 View Download Statistics

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