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Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics
Citation
Wilkins, D and Lauro, FM and Williams, TJ and Demaere, MZ and Brown, MV and Hoffman, JM and Andrews-Pfannkoch, C and Mcquaid, JB and Riddle, MJ and Rintoul, SR and Cavicchioli, R, Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics, Environmental Microbiology, 15, (5) pp. 1318-1333. ISSN 1462-2920 (2013) [Refereed Article]
Copyright Statement
Copyright 2012 Society for Applied Microbiology and Blackwell Publishing
DOI: doi:10.1111/1462-2920.12035
Abstract
We performed a metagenomic survey (6.6 Gbp of 454 sequence data) of Southern Ocean (SO) microorganisms during the austral summer of 2007–2008, examining the genomic signatures of communities across a latitudinal transect from Hobart (44°S) to the Mertz Glacier, Antarctica (67°S). Operational taxonomic units (OTUs) of the SAR11 and SAR116 clades and the cyanobacterial genera Prochlorococcus and Synechococcus were strongly overrepresented north of the Polar Front (PF). Conversely, OTUs of the Gammaproteobacterial Sulfur Oxidizer-EOSA-1 (GSO-EOSA-1) complex, the phyla Bacteroidetes and Verrucomicrobia and order Rhodobacterales were characteristic of waters south of the PF. Functions enriched south of the PF included a range of transporters, sulfur reduction and histidine degradation to glutamate, while branched-chain amino acid transport, nucleic acid biosynthesis and methionine salvage were overrepresented north of the PF. The taxonomic and functional characteristics suggested a shift of primary production from cyanobacteria in the north to eukaryotic phytoplankton in the south, and reflected the different trophic statuses of the two regions. The study provides a new level of understanding about SO microbial communities, describing the contrasting taxonomic and functional characteristics of microbial assemblages either side of the PF.
Item Details
Item Type: | Refereed Article |
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Keywords: | Southern Ocean, microorganisms, Biogeographic partitioning, metagenomic survey |
Research Division: | Biological Sciences |
Research Group: | Ecology |
Research Field: | Marine and estuarine ecology (incl. marine ichthyology) |
Objective Division: | Environmental Management |
Objective Group: | Coastal and estuarine systems and management |
Objective Field: | Assessment and management of coastal and estuarine ecosystems |
UTAS Author: | Rintoul, SR (Dr Steve Rintoul) |
ID Code: | 87629 |
Year Published: | 2013 |
Web of Science® Times Cited: | 55 |
Deposited By: | CRC-Antarctic Climate & Ecosystems |
Deposited On: | 2013-11-28 |
Last Modified: | 2015-02-02 |
Downloads: | 0 |
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