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Association of genetic variants in the TMCO1 gene with clinical parameters related to glaucoma and characterization of the protein in the eye


Sharma, S and Burdon, KP and Chidlow, G and Klebe, S and Crawford, A and Dimasi, DP and Dave, A and Martin, S and Javadiyan, S and Wood, JPM and Casson, R and Danoy, P and Griggs, K and Hewitt, AW and Landers, J and Mitchell, P and Mackey, DA and Craig, JE, Association of genetic variants in the TMCO1 gene with clinical parameters related to glaucoma and characterization of the protein in the eye, Investigative Ophthalmology & Visual Science, 53, (8) pp. 4917-4925. ISSN 0146-0404 (2012) [Refereed Article]

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Copyright IOVS Online by the Association for Research in Vision and Ophthalmology

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DOI: doi:10.1167/iovs.11-9047


Purpose: Glaucoma is the leading cause of irreversible blindness worldwide. Primary open angle glaucoma (POAG) is the most common subtype. We recently reported association of genetic variants at chromosomal loci, 1q24 and 9p21, with POAG. In this study, we determined association of the most significantly associated single nucleotide polymorphism (SNP) rs4656461, at 1q24 near the TMCO1 gene, with the clinical parameters related to glaucoma risk and diagnosis, and determined ocular expression and subcellular localization of the human TMCO1 protein to understand the mechanism of its involvement in POAG.

Methods: Association of SNP rs4656461 with five clinical parameters was assessed in 1420 POAG cases using linear regression. The TMCO1 gene was screened for mutations in 95 cases with a strong family history and advanced disease. Ocular expression and subcellular localization of the TMCO1 protein were determined by immunolabeling and as GFP-fusion.

Results: The data suggest that individuals homozygous for the rs4656461 risk allele (GG) are 4 to 5 years younger at diagnosis than noncarriers of this allele. Our data demonstrate expression of the TMCO1 protein in most tissues in the human eye, including the trabecular meshwork and retina. However, the subcellular localization differs from that reported in other studies. We demonstrate that the endogenous protein localizes to the cytoplasm and nucleus in vivo and ex vivo. In the nucleus, the protein localizes to the nucleoli.

Conclusions: This study shows a relationship between genetic variation in and around TMCO1 with age at diagnosis of POAG and provides clues to the potential cellular function/s of this gene.

Item Details

Item Type:Refereed Article
Research Division:Biomedical and Clinical Sciences
Research Group:Ophthalmology and optometry
Research Field:Ophthalmology
Objective Division:Health
Objective Group:Clinical health
Objective Field:Clinical health not elsewhere classified
UTAS Author:Burdon, KP (Professor Kathryn Burdon)
UTAS Author:Hewitt, AW (Professor Alex Hewitt)
UTAS Author:Mackey, DA (Professor David Mackey)
ID Code:83025
Year Published:2012
Web of Science® Times Cited:32
Deposited By:Medicine
Deposited On:2013-02-27
Last Modified:2016-11-24

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