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DanteR: An extensible R-based tool for quantitative analysis of -omics data

Citation

Taverner, T and Karpievitch, YV and Polpitiya, AD and Brown, JN and Dabney, AR and Anderson, GA and Smith, RD, DanteR: An extensible R-based tool for quantitative analysis of -omics data, Bioinformatics, 28, (18) pp. 2404-2406. ISSN 1367-4803 (2012) [Refereed Article]


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Copyright Statement

Copyright The Author 2012. Published by Oxford University Press. All rights reserved.

DOI: doi:10.1093/bioinformatics/bts449

Abstract

Motivation: The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized soft-ware for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab.

Availability: DanteR and its associated user guide are available for download free of charge at http://omics.pnl.gov/software/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation.

Item Details

Item Type:Refereed Article
Research Division:Mathematical Sciences
Research Group:Statistics
Research Field:Biostatistics
Objective Division:Expanding Knowledge
Objective Group:Expanding Knowledge
Objective Field:Expanding Knowledge in the Mathematical Sciences
Author:Karpievitch, YV (Dr Yuliya Karpievitch)
ID Code:80409
Year Published:2012
Web of Science® Times Cited:57
Deposited By:Mathematics and Physics
Deposited On:2012-10-31
Last Modified:2015-01-27
Downloads:1 View Download Statistics

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