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Spatial modelling of bacterial diversity over the selected regions in Bangladesh by next-generation sequencing: role of water temperature

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posted on 2023-05-20, 15:17 authored by Akter, N, Wahiduzzaman, M, Yeasmin, A, Islam, KS, Luo, J-J
In this study, a spatial model has been developed to investigate the role of water temperature to the distribution of bacteria over the selected regions in the Bay of Bengal, located in the southern region of Bangladesh using next-generation sequencing. Bacterial concentration, quantitative polymerase chain reactions, and sequencing were performed on water samples and identified Acidobacteria, Actinobacteria, Bacteroidetes, Chlorobi, Chloroflexi, Cyanobacteria, Firmicutes, Nitrospirae, Planctomycetes, Proteobacteria, and Verrucomicrobia. The spatial model tessellated the parts of the Bay of Bengal with hexagons and analyzed the relationship between the distribution of bacteria and water temperature. A geographically weighted regression was used to observe whether water temperature contributed strongly or weakly to the distribution of bacteria. The residuals were examined to assess the model’s fitness. The spatial model has the potential to predict the bacterial diversity in the selected regions of Bangladesh.

History

Publication title

Applied Sciences

Volume

10

Issue

7

Article number

2537

Number

2537

Pagination

1-9

ISSN

2076-3417

Department/School

Institute for Marine and Antarctic Studies

Publisher

MDPIAG

Place of publication

Germany

Rights statement

Copyright 2020 The Authors. Licensed under Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/

Repository Status

  • Open

Socio-economic Objectives

Marine biodiversity

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