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Characterization and expression profiling of the ICE-CBF-COR genes in wheat

Citation

Guo, J and Ren, Y and Tang, Z and Shi, W and Zhou, M, Characterization and expression profiling of the ICE-CBF-COR genes in wheat, PeerJ, 7 Article e8190. ISSN 2167-8359 (2019) [Refereed Article]


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DOI: doi:10.7717/peerj.8190

Abstract

Cold stress is one of the major abiotic stresses that limit crop production. The ICE-CBF-COR pathway is associated with cold stress response in a wide variety of crop species. However, the ICE-CBF-COR genes has not been well characterized in wheat (Triticum aestivum). This study identified, characterized and examined the expression profiles of the ICE, CBF and COR genes for cold defense in wheat. Five ICE (inducer of CBF expression) genes, 37 CBF (C-repeat binding factor) genes and 11 COR (cold-responsive or cold-regulated) genes were discovered in the wheat genome database. Phylogenetic trees based on all 53 genes revealed that CBF genes were more diverse than ICE and COR genes. Twenty-two of the 53 genes appeared to include 11 duplicated pairs. Twenty rice (Oryza sativa) genes and 21 sorghum (Sorghum bicolor) and maize (Zea mays) genes showed collinearity with the wheat ICE, CBF and COR genes. Transcriptome data and qRT-PCR analyses revealed tissue-specific expression patterns of the ICE, CBF and COR genes, and identified similarities in the expression pattern of genes from the same family when subjected to drought, heat, drought plus heat, and cold stress. These results provide information for better understanding the biological roles of ICE, CBF, COR genes in wheat.

Item Details

Item Type:Refereed Article
Keywords:wheat, cold tolerance, expression patterns, Triticum aestivum, ICE-CBF-COR
Research Division:Agricultural and Veterinary Sciences
Research Group:Crop and Pasture Production
Research Field:Agro-ecosystem Function and Prediction
Objective Division:Plant Production and Plant Primary Products
Objective Group:Winter Grains and Oilseeds
Objective Field:Barley
UTAS Author:Zhou, M (Professor Meixue Zhou)
ID Code:136236
Year Published:2019
Deposited By:Zoology
Deposited On:2019-12-09
Last Modified:2020-01-07
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