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BioTIME: a database of biodiversity time series for the Anthropocene

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Dornelas, M and Antao, LH and Moyes, F and Bates, AE and Magurran, AE and Adam, D and Akhmetzhanova, AA and Appeltans, W and Arcos, JM and Arnold, H and Ayyappan, N and Badihi, G and Baird, AH and Barbosa, M and Barreto, TE and Bassler, C and Bellgrove, A and Belmaker, J and Benedetti-Cecchi, L and Bett, BJ and Bjorkman, AD and Blazewicz, M and Blowes, SA and Bloch, CP and Bonebrake, TC and Boyd, S and Bradford, M and Brooks, AJ and Brown, JH and Bruelheide, HH and Budy, P and Carvalho, F and Castaneda-Moya, E and Chen, CA and Chamblee, JF and Chase, TJ and Collier, LS and Collinge, SK and Condit, R and Cooper, EJ and Cornelissen, JHC and Cotano, U and Crow, SK and Damasceno, G and Davis, CH and Davis, RA and Day, FP and Degraer, S and Doherty, TS and Dunn, TE and Durigan, G and Duffy, JE and Edelist, D and Edgar, GJ and Elahi, R and Elmendorf, SC and Enemar, A and Ernest, SKM and Escribano, R and Estiarte, M and Evans, BS and Fan, T-Y and Farah, FT and Fernandes, LL and Farneda, FZ and Fidelis, A and Fitt, R and Fosaa, AM and Franco, GADC and Frank, GE and Fraser, WR and Garci, H and Gatti, RC and Givan, O and Gorgone-Barbosa, E and Gould, WA and Gries, C and Grossman, GD and Gutierrez, JR and Hale, S and Harmon, ME and Harte, J and Haskins, G and Henshaw, DL and Hermanutz, L and Hidalgo, P and Higuchi, P and Hoey, A and Van Hoey, G and Hofgaard, A and Holeck, K and Hollister, RD and Holmes, R and Hoogenboom, M and Hsieh, C and Hubbell, SP and Huettmann, F and Huffard, CL and Hurlbert, AH and Ivanauskas, NM and Janik, D and Jandt, U and Jazdzewska, A and Johannessen, T and Johnstone, J and Jones, J and Jones, FAM and Kang, J and Kartawijawa, T and Keeley, EC and Kelt, DA and Kinnear, R and Klanderud, K and Knutsen, H and Koenig, CC and Kortz, AR and Kral, K and Kuhnz, LA and Kuo, C-Y and Kushner, DJ and Laguionie-Marchais, C and Lancaster, LT and Lee, CM and Lefcheck, JS and Levesque, E and Lightfoot, D and Lloret, F and Lloyd, JD and Lopez-Baucells, A and Louzao, M and Madin, JS and Magnusson, B and Malamud, S and Matthews, I and McFarland, KP and McGill, B and McKnight, D and McLarney, WO and Meador, J and Meserve, PL and Metcalfe, DJ and Meyer, CFJ and Michelsen, A and Milchakova, N and Moens, T and Moland, E and Moore, J and Moreira, CM and Muller, J and Murphy, G and Myers-Smith, IH and Myster, RW and Naumov, A and Neat, F and Nelson, JA and Nelson, MP and Newton, SF and Norden, N and Oliver, JC and Olsen, EM and Onipchenko, VG and Pabis, K and Pabst, RJ and Paquette, A and Pardede, S and Paterson, DM and Pelissier, R and Penuelas, J and Perez-Matus, A and Pizarro, O and Pomatti, F and Post, E and Prins, E and Priscu, JC and Provoost, P and Prudic, KL and Pulliainen, E and Ramesh, BR and Ramos, OM and Rassweiler, A and Rebelo, JE and Reed, DC and Reich, PB and Remillard, SM and Richardson, AJ and Richardson, JP and van Rijn, I and Rocha, R and Rivera-Monroy, VH and Rixen, C and Robinson, KP and Rodrigues, RR and Rossa-Feres, DdC and Rudstam, L and Ruhl, H and Ruz, CS and Sampaio, EM and Rybicki, N and Rypel, A and Sal, S and Salgado, B and Santos, FAM and Savassi-Coutinho, AP and Scanga, S and Schmidt, J and Schooley, R and Setiawan, F and Shao, K-T and Shaver, GR and Sherman, S and Sherry, TW and Sicinski, J and Sievers, C and da Silva, AC and da Silva, FR and Silveira, FL and Slingsby, J and Smart, T and Snell, SJ and Soudzilovskaia, NA and Souza, GBG and Souza, FM and Souza, VC and Stallings, CD and Stanforth, R and Stanley, EH and Sterza, JM and Stevens, M and Stuart-Smith, R and Suarez, YR and Supp, S and Tamashiro, JY and Tarigan, S and Thiede, GP and Thorn, S and Tolvanen, A and Toniato, MTZ and Totland, O and Twilley, RR and Vaitkus, G and Valdivia, N and Vallejo, MI and Valone, TJ and Van Colen, C and Vanaverbeke, J and Venturoli, F and Verheye, HM and Vianna, M and Vieira, RP and Vrska, T and Vu, CQ and Vu, LV and Waide, RB and Waldock, C and Watts, D and Webb, S and Wesolowski, T and White, EP and Widdicombe, CE and Wilgers, D and Williams, R and Williams, SB and Williamson, M and Willig, MR and Willis, TJ and Wipf, S and Woods, KD and Woehler, EJ and Zawada, K and Zettler, ML, BioTIME: a database of biodiversity time series for the Anthropocene, Global Ecology and Biogeography, 27, (7) pp. 760-786. ISSN 1466-822X (2018) [Refereed Article]


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Copyright 2018 the Authors. Licensed under Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/

DOI: doi:10.1111/geb.12729

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.

Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.

Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).

Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.

Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.

Software format: .csv and .SQL.

Item Details

Item Type:Refereed Article
Keywords:Reef Life Survey, long-term monitoring, reef fish, biodiversity, global, spatial, species richness, temporal, turnover
Research Division:Biological Sciences
Research Group:Ecology
Research Field:Marine and Estuarine Ecology (incl. Marine Ichthyology)
Objective Division:Expanding Knowledge
Objective Group:Expanding Knowledge
Objective Field:Expanding Knowledge in the Environmental Sciences
UTAS Author:Edgar, GJ (Professor Graham Edgar)
UTAS Author:Stuart-Smith, R (Dr Rick Stuart-Smith)
UTAS Author:Woehler, EJ (Dr Eric Woehler)
ID Code:127231
Year Published:2018
Web of Science® Times Cited:22
Deposited By:Ecology and Biodiversity
Deposited On:2018-07-18
Last Modified:2018-11-15
Downloads:53 View Download Statistics

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