eCite Digital Repository

Testing and recommending methods for fitting size spectra to data

Citation

Edwards, AM and Robinson, JPW and Plank, MJ and Baum, JK and Blanchard, JL, Testing and recommending methods for fitting size spectra to data, Methods in Ecology and Evolution, 8, (1) pp. 57-67. ISSN 2041-210X (2017) [Refereed Article]


Preview
PDF
481Kb
  

Copyright Statement

Copyright 2016 Her Majesty the Queen in Right of Canada Licensed under Creative Commons Attribution 4.0 International (CC BY 4.0) https://creativecommons.org/licenses/by/4.0/

DOI: doi:10.1111/2041-210X.12641

Abstract

  • The size spectrum of an ecological community characterizes how a property, such as abundance or biomass, varies with body size. Size spectra are often used as ecosystem indicators of marine systems. They have been fitted to data from various sources, including groundfish trawl surveys, visual surveys of fish in kelp forests and coral reefs, sediment samples of benthic invertebrates and satellite remote sensing of chlorophyll.
  • Over the past decades, several methods have been used to fit size spectra to data. We document eight such methods, demonstrating their commonalities and differences. Seven methods use linear regression (of which six require binning of data), while the eighth uses maximum likelihood estimation. We test the accuracy of the methods on simulated data.
  • We demonstrate that estimated size-spectrum slopes are not always comparable between the seven regression-based methods because such methods are not estimating the same parameter. We find that four of the eight tested methods can sometimes give reasonably accurate estimates of the exponent of the individual size distribution (which is related to the slope of the size spectrum). However, sensitivity analyses find that maximum likelihood estimation is the only method that is consistently accurate, and the only one that yields reliable confidence intervals for the exponent.
  • We therefore recommend the use of maximum likelihood estimation when fitting size spectra. To facilitate this, we provide documented R code for fitting and plotting results. This should provide consistency in future studies and improve the quality of any resulting advice to ecosystem managers. In particular, the calculation of reliable confidence intervals will allow proper consideration of uncertainty when making management decisions.
  • Item Details

    Item Type:Refereed Article
    Keywords:size spectrum, power law, ecosystem approach to fisheries, ecosystem indicators, individual size distribution, truncated Pareto distribution
    Research Division:Biological Sciences
    Research Group:Ecology
    Research Field:Community Ecology
    Objective Division:Environment
    Objective Group:Ecosystem Assessment and Management
    Objective Field:Ecosystem Assessment and Management at Regional or Larger Scales
    UTAS Author:Blanchard, JL (Dr Julia Blanchard)
    ID Code:120918
    Year Published:2017
    Web of Science® Times Cited:16
    Deposited By:Ecology and Biodiversity
    Deposited On:2017-09-01
    Last Modified:2018-07-30
    Downloads:91 View Download Statistics

    Repository Staff Only: item control page