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High density, genome-wide markers and intra-specific replication yield an unprecedented phylogenetic reconstruction of a globally significant, speciose lineage of Eucalyptus
Citation
Jones, RC and Nicolle, D and Steane, DA and Vaillancourt, RE and Potts, BM, High density, genome-wide markers and intra-specific replication yield an unprecedented phylogenetic reconstruction of a globally significant, speciose lineage of Eucalyptus, Molecular Phylogenetics and Evolution, 105 pp. 63-85. ISSN 1055-7903 (2016) [Refereed Article]
Copyright Statement
Copyright 2016 Elsevier Inc.
DOI: doi:10.1016/j.ympev.2016.08.009
Abstract
We used genome-wide markers and an unprecedented scale of sampling to construct a phylogeny for a globally significant Eucalyptus lineage that has been impacted by hybridisation, recent radiation and morphological convergence. Our approach, using 3109 DArT markers distributed throughout the genome and 540 samples covering 185 terminal taxa in sections Maidenaria, Exsertaria, Latoangulatae and related smaller sections, with multiple geographically widespread samples per terminal taxon, produced a phylogeny that largely matched the morphological treatment of sections, though sections Exsertaria and Latoangulatae were polyphyletic. At lower levels there were numerous inconsistencies between the morphological treatment and the molecular phylogeny, and taxa within the three main sections were generally not monophyletic at the series (at least 62% polyphyly) or species (at least 52% polyphyly) level. Some of the discrepancies appear to be the result of morphological convergence or misclassifications, and we propose some taxonomic reassessments to address this. However, many inconsistencies appear to be the products of incomplete speciation and/or hybridisation. Our analysis represents a significant advance on previous phylogenies of these important eucalypt sections (which have mainly used single samples to represent each species), thus providing a robust phylogenetic framework for evolutionary and ecological studies.
Item Details
| Item Type: | Refereed Article |
|---|---|
| Keywords: | phylogeny, Eucalyptus, Eucalypt, nuclear DNA, Australia, DArT, Diversity Arrays Technology, reticulate evolution, evolutionary history, hybridisation, taxonomy |
| Research Division: | Biological Sciences |
| Research Group: | Evolutionary Biology |
| Research Field: | Phylogeny and Comparative Analysis |
| Objective Division: | Plant Production and Plant Primary Products |
| Objective Group: | Forestry |
| Objective Field: | Native Forests |
| Author: | Jones, RC (Dr Rebecca Jones) |
| Author: | Steane, DA (Dr Dorothy Steane) |
| Author: | Vaillancourt, RE (Professor Rene Vaillancourt) |
| Author: | Potts, BM (Professor Brad Potts) |
| ID Code: | 111215 |
| Year Published: | 2016 |
| Web of Science® Times Cited: | 3 |
| Deposited By: | Plant Science |
| Deposited On: | 2016-09-05 |
| Last Modified: | 2017-11-01 |
| Downloads: | 0 |
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