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High density, genome-wide markers and intra-specific replication yield an unprecedented phylogenetic reconstruction of a globally significant, speciose lineage of Eucalyptus

Citation

Jones, RC and Nicolle, D and Steane, DA and Vaillancourt, RE and Potts, BM, High density, genome-wide markers and intra-specific replication yield an unprecedented phylogenetic reconstruction of a globally significant, speciose lineage of Eucalyptus, Molecular Phylogenetics and Evolution, 105 pp. 63-85. ISSN 1055-7903 (2016) [Refereed Article]

Copyright Statement

Copyright 2016 Elsevier Inc.

DOI: doi:10.1016/j.ympev.2016.08.009

Abstract

We used genome-wide markers and an unprecedented scale of sampling to construct a phylogeny for a globally significant Eucalyptus lineage that has been impacted by hybridisation, recent radiation and morphological convergence. Our approach, using 3109 DArT markers distributed throughout the genome and 540 samples covering 185 terminal taxa in sections Maidenaria, Exsertaria, Latoangulatae and related smaller sections, with multiple geographically widespread samples per terminal taxon, produced a phylogeny that largely matched the morphological treatment of sections, though sections Exsertaria and Latoangulatae were polyphyletic. At lower levels there were numerous inconsistencies between the morphological treatment and the molecular phylogeny, and taxa within the three main sections were generally not monophyletic at the series (at least 62% polyphyly) or species (at least 52% polyphyly) level. Some of the discrepancies appear to be the result of morphological convergence or misclassifications, and we propose some taxonomic reassessments to address this. However, many inconsistencies appear to be the products of incomplete speciation and/or hybridisation. Our analysis represents a significant advance on previous phylogenies of these important eucalypt sections (which have mainly used single samples to represent each species), thus providing a robust phylogenetic framework for evolutionary and ecological studies.

Item Details

Item Type:Refereed Article
Keywords:phylogeny, Eucalyptus, Eucalypt, nuclear DNA, Australia, DArT, Diversity Arrays Technology, reticulate evolution, evolutionary history, hybridisation, taxonomy
Research Division:Biological Sciences
Research Group:Evolutionary Biology
Research Field:Phylogeny and Comparative Analysis
Objective Division:Plant Production and Plant Primary Products
Objective Group:Forestry
Objective Field:Native Forests
Author:Jones, RC (Dr Rebecca Jones)
Author:Steane, DA (Dr Dorothy Steane)
Author:Vaillancourt, RE (Professor Rene Vaillancourt)
Author:Potts, BM (Professor Brad Potts)
ID Code:111215
Year Published:2016
Web of Science® Times Cited:3
Deposited By:Plant Science
Deposited On:2016-09-05
Last Modified:2017-11-01
Downloads:0

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